Solanum pennellii: 107014622
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Entry
107014622 CDS
T04130
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107014622
03041 Spliceosome [BR:
spen03041
]
107014622
03036 Chromosome and associated proteins [BR:
spen03036
]
107014622
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107014622
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107014622
mRNA cycle factors
Common to processing body (P body) and stress granule
107014622
Spliceosome [BR:
spen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107014622
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107014622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
107014622
NCBI-ProteinID:
XP_015070094
LinkDB
All DBs
Position
3:complement(17046456..17054318)
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AA seq
612 aa
AA seq
DB search
MRNSWADSVENVATDNGGPSGASGASASKRRSSYVPPHLRNRPMTAEPLAPSHGGPPSGN
DRSGFNGPTSGPRWGGSRPDYGRQGGYGGGGRGGGWGGRGGGWGREREVNPFGNDADVDL
EQSFDQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEAVNLNIRRCKYVKPTPVQ
RYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGNFPQRPHGSRTVFPLALILSPT
RELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAK
VSLQMIRYLALDEADRMLDMGFEPQIRRIVQQMDMPPPGERQTMLFSATFPKEIQRLASD
FLANYIFLAVGRVGSSTDLIVQRVEFVHDVDKRSHLMDLLHAQMANGVHGKHSLTLVFVE
TKKGADALEHWLCINGFPATAIHGDRTQQEREQALRTFKRGDTPILVATDVAARGLDIPH
VSHVINFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDGNLSMAKPLADLMQEANQDVPE
WLTRYASRSSFGGGRNRRAGGGRFGGRDFRRDSSYNRSGGGGGMNYYDGGNSSGGYGNYS
GGYGPGVTSAWD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaggaactcatgggcagattctgttgagaatgtagctactgataatggtgggcctagt
ggcgccagcggagcttctgcttctaagaggagatcatcttatgtcccaccgcatcttcgc
aacagaccaatgacagcggaacctctagctccatcgcacggtggcccaccttcgggtaat
gaccgctcagggtttaatggaccaactagtgggcctcgatggggtggttctaggccagat
tacggacgccaaggggggtatggtggtggtggaagaggaggtggttggggtggcagagga
ggtggttggggtagagagcgggaagttaacccgtttggtaatgatgcagatgtggacttg
gagcaatcgtttgatcaagagaatactggtataaattttgatgcttatgaggatattcca
gtggaaacaagtggagaaaatgtgccacctcctgttaatacatttgcagagatagattta
ggggaggccgttaacttgaatattaggaggtgcaaatatgtaaagccaactcctgtccag
cgatatgcaattcccatctccttagcaggacgagatctcatggcctgtgcccagactgga
tcaggcaagacagctgccttttgtttcccaattattagtggaatcatgagggggaatttt
ccgcaacggcctcatgggtcgcggacagtttttccccttgctcttattctctcaccaaca
agagagctctcaatgcagatacacgaggaagctaaaaagttctcttatcagactggtgta
agagtggtagtggcctatggtggagccccgattaatcagcagctccgagagcttgagaga
ggtgttgatattcttgtggcaactcctggaagactggtcgatttacttgagagagcaaaa
gtttcattacagatgattagatatttagctctcgatgaggcagatcgtatgctggacatg
ggattcgaacctcaaatcagaaggatagtgcagcaaatggatatgcctccacctggtgaa
agacagactatgcttttcagtgccacattcccgaaagagattcagagactggcatctgat
tttcttgcaaactacatatttttggcagttgggcgggttggttctagtactgatttgatt
gttcagcgagttgagtttgtgcatgatgttgacaagagaagccatcttatggatctactt
catgcacagatggctaatggggttcatggcaagcattctctaactttggtatttgttgaa
acaaagaagggtgctgatgcattggagcattggttgtgtattaatggatttcctgcaact
gctattcatggtgataggactcagcaggaaagggagcaagcattgcgaacattcaagaga
ggagataccccaattttagttgcaacggatgtggccgctcgaggccttgatatccctcat
gtttctcatgttataaactttgaccttcctaatgacattgatgattatgtgcatcgtata
ggcaggacaggtcgtgcaggcaagactggattagcaactgctttctttaatgatggtaac
ctttccatggccaaacccctagctgacttgatgcaagaagctaatcaggatgtacctgaa
tggttgactcgttatgctagccgttcatcattcggaggaggcagaaacaggcgagctggc
ggagggcgttttggtgggcgtgacttcaggagggattcgtcatacaatagaagtggaggg
ggaggtggtatgaattactatgatggaggtaatagtagtggcggttatggcaattatagt
gggggatatggtcctggagtaactagtgcttgggactag
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