Solanum pennellii: 107014623
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Entry
107014623 CDS
T04130
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107014623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107014623
03009 Ribosome biogenesis [BR:
spen03009
]
107014623
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107014623
Spliceosome [BR:
spen03041
]
Complex A
U1 snRNP components
U1 related factors
107014623
Complex B
107014623
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Helicases
107014623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107014623
NCBI-ProteinID:
XP_015070098
LinkDB
All DBs
Position
3:67062873..67071766
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AA seq
651 aa
AA seq
DB search
MSYPNYDSRYGDSGSYRQRRSDLMGPQPSMYPRPMPGGGAASYGRGGPLPYGGPQAGGPP
PIDGGSRGGMGGSGRVGGGYQPFEGGFSRGSDMGRFGGGGVDRVANGGMGERPGRFGAGP
SYSGGRSGGGGGRGGRGFDGGYSGGRGGGRFSSNGGRGSSGGRGGRHGRSRDDLDNLTLP
KQDFGNLVPFEKNFYVENHAVRAMTDQEVAHYRARRDITIEGQDVPRPIQMFHEANFPDY
CLEVISRLGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLAQ
GDGPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLRRGVEIVIAT
PGRLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKLISQIRPDRQTLYWSATWPK
EVEALSRQFLRNPYKVIIGSPELKANQSIRQVIEVVTDLEKYSRLIGLLKEVMDGSRILI
FVETKKGCDQVTRQLRMDGWPALSIHGDKSQDERDWVLADFKSGRSPIMIATDVAARGLD
VKDIKCVINYDFPSSLEDYIHRIGRTGRAGATGTAFTFFTHANAKFTRELIKILQQAGQI
VPPQLSALARSSGPSTGGSNFRSRGRGGFGNRGGQRSGSNVIPIGGSRRPW
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgagctaccctaattacgactccagatacggtgattcaggctcctatcgacagcgacga
agtgacctaatgggtccgcagccttctatgtatccacggcctatgcctggtggaggtgcc
gctagctatggccgtggtgggccgcttccttatggaggtcctcaggcagggggtccaccg
cctatcgatggtggttctagagggggtatgggtggatctggacgcgttggtggtgggtat
caaccttttgaaggtgggttttcaagagggtcggatatgggcaggtttggaggtggagga
gttgacagagtggctaatggtggtatgggggaacggcctgggagatttggtgctgggcca
agctacagtggaggtaggagtggtggtggtggtgggagaggaggtaggggttttgatgga
ggctacagtggcggacgaggaggtggaaggtttagttcaaatggaggacgtggtagtagt
ggcgggagaggaggtaggcatgggagatcgcgagatgatcttgacaaccttactcttcca
aagcaagactttggaaatttggtaccttttgagaagaatttttatgttgaaaatcatgct
gtgagggcaatgacggatcaggaggttgctcattatcgtgcacggcgtgacattaccatt
gaaggacaggatgtccctaggccaattcagatgttccatgaggcgaactttcctgattat
tgcctcgaggttatttcaagactaggatttgttgagccaacacctatccaatcacaagga
tggccaatggctctaaagggcagagacttaattggaattgctgaaaccggttctggaaag
actttggcatatttattgcctgctttggtccatgtcagcgcacagccccggttggcacaa
ggtgatggtccaattgtgctggtattagcacctacaagagaattagctgttcagattcaa
gaagaagctgtgaaatttggatcacgtgccaacataagaagcacttgcatatatggtggt
gccccaaaaggacctcaaatccgtgaccttagaagaggagttgaaattgtgatagcaacc
cccggtcggttaatagatatgctggaagctcaacatacaaacctgaagcgggtgacatat
cttgtattggacgaggctgatcgaatgctggatatggggtttgagccgcaaataaggaaa
ctaatttcccagattagaccagatagacaaaccttgtattggagtgccacttggcccaag
gaggttgaagcgctgtctaggcagtttctacgtaatccctataaggtcatcattgggtct
ccagaattgaaagcaaatcaatctataaggcaagtcattgaagttgtcacagatttagag
aaatatagcaggttgattgggcttttgaaagaagtgatggatggaagccgaattctaata
tttgtggaaacaaaaaaaggatgtgatcaagtcaccagacaattgagaatggatggatgg
ccagctttatctatccatggtgataaaagccaggatgagagggattgggtcctggctgat
ttcaaaagtggaagaagtcccataatgattgccactgatgttgctgcacgtggtcttgat
gttaaggacataaagtgtgttatcaactatgatttcccttcaagtctcgaggattatatt
cataggattggcagaactggacgtgctggcgcaacagggactgcttttacatttttcact
cacgcaaatgccaagtttacgagagagcttatcaagatcctgcagcaggcaggacaaatt
gttccccctcaactttctgcattagctaggtctagtggtcctagcactggaggaagcaat
ttcaggtctagaggacgaggtggctttgggaaccgggggggacagagatctgggtctaat
gtaattcctattggcggttcaagaaggccttggtag
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