Solanum pennellii: 107014694
Help
Entry
107014694 CDS
T04130
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
spen
Solanum pennellii
Pathway
spen03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107014694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spen03036
]
107014694
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
107014694
SWR1 complex
107014694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Cas3-like_C
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
107014694
NCBI-ProteinID:
XP_027771126
UniProt:
A0ABM1V5V8
LinkDB
All DBs
Position
3:complement(32006246..32040585)
Genome browser
AA seq
2054 aa
AA seq
DB search
MKKPESWCIYLEIIMASKVYKCKPDHETRVRRQKGLEAPKEPQRPKTHWDHVLEEMVWLS
KDFESERKWKLTQAKKVAIRASKGMLDQATRGEKRVKEEEQRLRKVALNISKDIKKFWLK
IEKLVLYKHQLEIDEKKKKTLDKQLEFLLGQTERYSTMLAENLVSSPSTCKRTNSLPAPE
AFRIQCKEGSEGDVTNRDCVGENLQPLSTGSDIDDDFGVQSEDEMEDDEHTIEEDEAVIT
KEEREEELAALQNEMDLPLEELLKHYAIGEASRDCSPEKSGADVIVSSGKGRGKCRDVDV
ATETDKDSSPAISGRRSVESNGVLSVPNNYCSDLGKDKLRSPRKKYQEFGQINLLDDFND
EQDDDDYVLAVGEDKGYNMDDETTLLEEEELANAEANDAADEIALLQKESELPLDELLAR
YKEDFDTDEDVGDDSESYASASDELLEYPAHNESEPVRVNDVPCDVLPTTVAENGEKEVE
SVDKTGEERQSEDIIADAAAAARSAQPTGSTFSTTKVRTKFPFLLKFPLREYQHIGLDWL
VTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLRW
CPAFKILTYFGSAKERKIKRQGWLKPNSFHICITTYRLVIQDSKVFKRKKWKYLILDEAH
LIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCN
PISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPSKHEHVIYCKLSRRQRNLY
EDFIASSETQATLASSNFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDMHLSSSI
CSMLSPGIFSTINLGALGLLFTHLDFSMTSWESNDVQSIATPSSLIEGRVSLIHDEETSQ
GLKRNKKFHGTNIFEEIQKALAEERLREAKERAAAIARWNSMKCKQKPMYSTSLREIVTV
KHPVHGIYCQKSNPLSFLYSARLAESILTPVERFQQMVDQVETFMFAIPAARSPAPACWC
SKPGTAIFFSPTFKETCSEILSPLLTPFRPAIVRRQVYFPDRRLIQFDCGKLQELAGLLR
RLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFL
FILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE
ENILKKANQKRALDDLVIQSGSYNTEFFKKLDPMELFSGHRTVSLKNIEVEKNSNVTEVQ
LSNADVEAALQNVEDEADYMALKKVEEEEAVDNQEFTEEAIVRLEDDELGNDDETKADEH
ADHEVPVTTSSKELVATSNVSNPLKEQAITFAGKEDDIDMLADVKQMAAAAAAAGQAILS
FESQLRPIDRYAVRFLELWDPIIDKTAIESQGHFEETEWELDRIEKLKEDMEAEIDDDEE
PLVYESWDTDYATEAYRQQVETLAKHQLKEELEAEAKEKELAEYENSMGHTSSVPKTKSK
KKAKKTKFKSLKKGGLASERQSLKEESSIELMPIDDDNLSSEPVTTPDSAQEKKRKLPRY
DEDVKGAKKSKKMKKSSEVSSLVIHSTYHGKRQVESKELKQYDVGTMNIELKPISRSKMG
GKVLISPMPVKRVFSIKSERPIRKGKTWSKDYFPSADSWLQQEDAVLCASVHEYGPHWSL
VSDILYGMTAGGAYRGRYRHPLHCCERFRELIQRYVLSAADNVNDRSNNTGSVKGLLKVT
EENVRLVLDIASEIPDHEPLVQTHFFALLSSVWKVQKNLKKTFSSSQNGFFHSGSLLSPI
MNRVSMNHSMSPPIRRFSNSSLCTKLVAIALSDQQSAQSDERIRICDQREEASFPSEHLD
ITLEFGAEKDDKTIPLLHPVTVKILGPESSLFPRMTTAEHHHFKSSQIMAENRFWAASSS
EVRLDWASLAFPIGDAKSRTPLKSQFLGKHKPSDSVKVSKSKSRKILMESSDVGHTKDLL
FPPTPSVSDDSCPTADVGFSFLTESGNDFEDRTLLDLNPIFNAGSEDVLRHEYVPEFILG
LDDWSVFPEFTDIG
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagccggaatcatggtgtatatatcttgagattatcatggcttctaaagtgtac
aagtgtaagccggaccatgaaacacgcgtacgacgccaaaagggtcttgaagcacctaaa
gaacctcaacgacctaaaacacactgggatcatgttcttgaggagatggtctggttgtcg
aaggactttgaatcagagaggaagtggaagttgactcaagcaaagaaggttgctattcga
gctagcaagggaatgcttgatcaggcgacacggggagaaaagcgtgttaaggaagaagag
caacgtctgcgtaaagttgcactcaatatctcaaaggacatcaaaaaattttggttgaaa
atagagaagctggttctttacaagcatcagttggagatagatgagaagaagaagaaaaca
cttgataagcagctagagtttcttcttggacaaacagaaaggtactcaacaatgcttgca
gagaatcttgtaagttcaccaagtacttgcaaacgaaccaattctttgcctgcaccagaa
gcatttagaatccagtgtaaagaagggagtgaaggggatgtaacaaatcgtgactgtgtt
ggagaaaatcttcaacctctttcaactggtagtgatattgatgacgacttcggcgtgcaa
tctgaagacgaaatggaagatgacgagcatactattgaagaagatgaggctgttataact
aaagaagaaagggaagaagagttggctgctttacaaaatgaaatggatctacctcttgaa
gagctccttaagcattatgcaattggggaagctagcagagactgtagccccgagaagagt
ggtgcagatgttatagtcagttctggcaagggcaggggtaaatgtagagatgttgatgtt
gctactgaaaccgacaaagacagttcacctgcaatttctggtcgtcgttctgttgaaagt
aatggggtcttatcagttccaaataattattgttctgacctagggaaagacaagctaaga
agtcctcgaaagaagtatcaggagttcggccaaattaatttgttggatgactttaatgat
gaacaggatgatgatgattatgtccttgctgttggtgaagataagggatacaatatggat
gatgaaacaactttgctagaggaggaggagttggcaaatgcagaggcaaatgacgctgct
gatgagattgcgctgttgcaaaaggagagcgaacttcctttagatgagctccttgctagg
tataaagaggattttgatactgatgaagatgttggcgatgattctgaatcatatgcgtct
gcttctgatgaactcctggaatatccagcacacaatgaatctgaacccgttcgagtaaac
gatgtaccatgcgatgtactgcccactacagtcgctgagaatggagaaaaggaagttgaa
agtgtggataaaacaggggaagaaaggcagagtgaggatataattgctgatgcagcagct
gctgccagatccgcacaaccaacgggtagcaccttctcaacaaccaaagtgcggactaag
ttccccttccttctaaaatttccccttcgtgagtatcaacatattggtttggattggctt
gtgaccatgtatgagaagaaacttaatggaatcctagcagatgaaatgggtttggggaag
actatcatgaccattgctcttcttgctcacctagcatgtgaaaaaggaatatggggtcct
catcttattgttgtcccaactagtgtcatgctaaactgggagactgagtttcttagatgg
tgtcctgctttcaaaatcttgacatattttggcagtgctaaagagcgaaagattaaaagg
caaggctggttgaagccaaactcatttcatatatgtatcacaacttacagactcgttata
caagactccaaagttttcaagcgtaagaagtggaaatacctaattttagatgaagctcat
ctaataaagaattggaaatcgcagagatggcagacacttctcaactttaactcaaaacgg
cgtatacttttgactggtacaccattgcagaatgatctcatggagctgtggtctctaatg
catttcttgatgcctcatatttttcagtctcaccaagaattcaaagattggttctgtaat
cctatttctggaatggttgagggacaagaaaaggttaataaggaagttgttgatcgcttg
cataatgtccttcgtccctttattctccgccgtttgaaaagggatgtggagaagcagctt
ccttcaaaacatgagcacgtaatttattgtaagctctcgaggaggcagcgtaatttgtat
gaagacttcattgctagttcagagacacaagccactctagctagttcaaatttttttggg
atgataagtgtaataatgcaacttcgtaaagtgtgcaatcatcctgacttatttgaagga
cgtccaatagtgagctcctttgatatgagtggtattgatatgcacttgagctcttccatt
tgctcgatgctttcacctggtatattttcaactatcaaccttggtgctttggggttgttg
tttacacatcttgatttttcaatgacgtcttgggagagtaatgatgtccaatccatcgct
accccatcaagcttgattgagggtcgtgtgtctctgattcatgatgaagaaacttctcaa
ggacttaaacggaataagaagtttcatggaacaaatatatttgaggagatccaaaaggca
cttgctgaggagagactgagagaagcaaaggagagagcagcagctattgcacggtggaat
tccatgaagtgtaagcagaaacctatgtattctacaagtcttcgggagattgttactgtg
aaacatccagttcatggcatttactgtcaaaaaagtaatcccttgtcatttttgtactcc
gctaggcttgcggaatcaatactgacaccagttgagagattccaacaaatggttgatcag
gttgagacattcatgtttgcaattcctgctgcacgttccccagcacctgcttgctggtgc
agtaaaccaggaactgccatatttttcagtccaacctttaaggagacatgttctgagatt
ctttctcctcttctcactccttttcgcccagccattgttagaaggcaagtctactttcca
gataggcggcttatacaatttgactgtggaaagctgcaggagcttgcaggtttattgagg
cgtttaaaatcagaaggtcaccgtgcattaattttcacccagatgacaaagatgcttgat
gttttagaagctttcattaatttgtatggttacacttacatgcgtttggatggttctact
ccgccagaagagagacaaactttgatgcaacgtttcaacacgaatccaaagattttcctg
tttattttatcaacccgtagtggtggagttggcatcaacttggtgggtgcagacacagtc
atcttttatgatagtgactggaacccagctatggatcaacaagctcaagatcgctgtcat
agaataggccagacccgtgaagtacacatttatcgattgataagtgagagcaccattgaa
gagaatattttgaaaaaggcaaaccagaagcgtgctctggatgatttggttatacagagt
ggaagttacaacactgaattcttcaagaaactggatccaatggaattgttctccggccac
agaacagtttccttaaagaatattgaagtagagaagaacagcaatgtcactgaggttcag
ctttctaatgctgacgttgaggctgctttgcaaaatgtagaagacgaggcagattacatg
gctctgaagaaagttgaagaggaagaggcagtagacaatcaggagttcactgaagaagca
attgtcaggttggaagatgatgaacttggtaatgatgatgagacgaaggctgatgagcat
gctgatcatgaagtgccagttacaacatcgagtaaagaacttgtggcaacgtcaaatgtt
agtaatccattaaaagaacaagcaattacttttgctggtaaagaagatgacattgacatg
ctggctgatgtcaaacagatggcagcagcagcagctgctgccggacaagctatcttgtct
ttcgagagtcagctacgtccaattgatcggtatgctgtacgttttctggagttatgggac
cctatcatagacaagacagctattgagtcacaaggtcattttgaagaaactgaatgggaa
ttggatagaattgaaaagttgaaggaagatatggaagcagagattgatgatgatgaagag
cctttagtttacgagagttgggatactgattatgcaactgaggcatacagacaacaggtt
gagactttggcaaagcatcagttgaaggaggagctggaagctgaagccaaagagaaagag
cttgcggaatatgagaactccatggggcatacatcttctgttccaaaaaccaagtcgaag
aagaaggcgaagaaaacaaagttcaaatctttgaaaaaaggaggtctagcttctgaacgt
caatctttgaaggaagagtcttcgatagagttgatgcccatagatgatgataatctatcc
agtgagccagttacgacgccggattctgctcaagagaagaagcgtaaacttccaagatat
gatgaggatgtgaaaggcgccaagaagtctaaaaaaatgaagaagtcctctgaggtatct
tctctggtaatacattcaacatatcatggaaagaggcaggttgaatctaaagaattgaaa
cagtatgatgttggcacgatgaacattgaactcaaaccaataagcagaagcaagatggga
gggaaagtcttaatcagtccaatgcctgttaaacgagtcttttctattaaatcagaaagg
ccaattaggaaaggtaaaacatggtctaaagattattttccatcagctgattcatggttg
caacaagaagatgcagtactttgtgcttctgttcatgagtatggtcctcactggagtttg
gtgagtgatatcttgtatggaatgactgctggcggtgcttatagaggaagatatcgtcac
cctcttcattgttgtgagaggtttagggaactcatacagagatatgtattatctgccgca
gacaatgtaaatgatagatccaacaatactggttctgtaaaaggtcttctcaaagtgact
gaggaaaatgttcgactggtgttggatattgcatcagagattccagatcacgagccactt
gttcaaacacatttctttgcccttctttcttccgtgtggaaagtgcagaaaaacctcaaa
aagacgttctcatcttcccagaatggattctttcattctggaagtttactttcaccaatt
atgaaccgtgtttcgatgaatcactcaatgagtccaccgataaggagattttctaattca
agtttatgcaccaagttagtagcaattgctctttctgatcagcagagtgcacagagtgat
gagagaatccgcatctgtgaccagagagaagaagcttcttttccttctgagcatttggat
attacactggaatttggggcagagaaagatgataagacaattcccttgctacatcccgta
actgtcaaaatacttggtcctgaatcttcattgtttccaagaatgacaacagctgagcat
catcatttcaagtcttcccagattatggctgaaaaccgattctgggctgcatcaagtagt
gaagtgcgtttggattgggcttcccttgcttttcctattggggatgccaagtcacgcact
ccgttgaaatcacaatttttggggaagcataagccctctgattcggtgaaggtatcgaaa
tctaagtccagaaagattttaatggaatctagtgatgttggtcataccaaggatctattg
tttccgccaacgccatctgtgtctgatgattcctgtccaacagctgatgtggggttttca
ttccttacagaaagtggaaatgatttcgaagataggaccctgttagatctaaatccgata
tttaatgcagggagtgaggatgtactccgtcatgaatatgttcccgaatttatattggga
cttgatgattggtcggtgtttcctgagttcacagatatcgggtag
DBGET
integrated database retrieval system
