Solanum pennellii: 107014698
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Entry
107014698 CDS
T04130
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107014698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107014698
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107014698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
Zn_ribbon_RanBP
MMR_HSR1
GTP_EFTU_D4
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
107014698
NCBI-ProteinID:
XP_015070213
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All DBs
Position
3:72497092..72510667
Genome browser
AA seq
731 aa
AA seq
DB search
MPRKVNYGVKYEEDFDDYEDYGYDYDDGYDCAEEYGVPPETRLKQESVKSGIWRCPICTF
DNEDTMNVCDICGVLRNPLVKKCVSSKENADGSRAVGGICKDSGASVMAESLFPSLLLQK
AKNVINFEAQNYCFKTEDCFYYKPGNICGQFHDLHRAFCSQSHCKIDIVPFKFDSPSPDD
LVLSGIAPSKLRPKADTDRILQLDISSNNKELSTEVKKELAAEGHPSSSTSLAKVKHDDL
KDSGPASKTRGNNGLASNLNDISVSSKPQSVDTGKSDSAASSSKNKPEKIVQPPQTEDNF
NQLNLAIVGHVDSGKSTLSGRLLHLLGRISHKEMHKYEKEAKQQGKGSFAYAWALDESAE
ERERGITMTVGVAYFNTKCYRVVLLDSPGHRDLVPNMISGATQADAAVLVIDASVGAFEA
GIDATGGQTREHAQLIKSFGVDQIIIAVNKMDAVGYSQERFDAIKKQLGTFLRACKFKDS
SVTWIPLSAMENQNLVTGPSESRFLSWFRGPCLLDAIDSLQPPQRDYSKPFLLPICDVVR
AQSQGQVSICGKLERGALQTGNKVLVMPFRDVATVRSLERDSQVYNAAKAGDSVTINLQG
IDANHVMAGGVLCHPEFPVPVANHLELKVLILDNGIPIVIGSQLEFLVHHAKEAARVVRI
LSLLDPKTGKETKKSPRCLLAKQNAMIEVVLQGMVCIDEHANCKALGRVSLRSSGRTVAL
GLVTRVIGKQE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaggtgaattatggagttaagtatgaggaagattttgatgactatgaagat
tacggttatgactatgatgatgggtatgattgtgcagaggaatatggtgtgccgccagaa
acaaggttaaaacaggagtcggttaagtctgggatttggcgttgtcccatttgcacattt
gataatgaagatactatgaatgtatgtgatatatgtggagtccttcgtaatccattggtc
aaaaaatgtgtcagcagtaaagaaaatgcagatggttcccgtgcagttggtggcatatgt
aaagattctggagcatctgtaatggccgagtctctatttccatcactgctgcttcagaaa
gcaaaaaatgttataaactttgaagcacagaattactgttttaagaccgaagattgcttt
tactacaagcctggaaatatatgtggacagtttcatgatttacacagagctttttgctct
caaagccactgcaagattgatatagtacctttcaagtttgattccccatctccagacgat
ttagtactgagtggaatagcaccatccaaattacgtcccaaagctgatactgacaggatc
ttacagttagatatctcatcaaataacaaggaactgagtacagaagtaaaaaaggaattg
gctgcggaagggcatccaagctcttcaacatcattagcaaaagttaagcacgatgatttg
aaggatagtggtcctgcttcgaaaactaggggaaataatggcctagcaagcaatttgaac
gatatatctgtatcatcaaagcctcaaagtgtggatacaggaaagagtgacagtgcagca
tcaagctcaaagaataagcctgagaaaattgtgcagcctcctcaaacagaagacaacttc
aaccagctaaatcttgcaattgttggccatgtggattctggaaagtcaacactatcagga
aggttgctgcacctattggggcggatatcccataaagaaatgcacaaatatgaaaaagag
gctaagcagcaaggaaaaggttcatttgcttatgcctgggcattggatgagagtgctgaa
gaaagagagaggggaataactatgacagtgggtgttgcctactttaacacaaaatgttac
cgtgttgttctgcttgattccccaggccacagggacttggtcccaaatatgatatcaggg
gctacacaagcagatgcagcagttcttgtaattgatgcttcagttggtgcatttgaagca
ggtattgatgctactggagggcagacgagggagcatgcacaacttatcaaaagctttggg
gtggatcagattataattgcagttaacaaaatggatgcagtgggatactcccaagaacga
tttgatgcaattaagaaacaattaggcacatttctccgtgcttgtaagtttaaagattct
tcagtaacatggattcccctaagtgccatggaaaaccaaaatttggtgacaggtccatca
gaatcacggttcttgtcctggtttcgaggtccttgcctattggatgcaatagactctctc
caacctcctcaaagagactactcgaagccatttttattgccaatatgtgatgttgttaga
gcacagtctcaagggcaagtgtcaatatgcggtaagttggagaggggagctcttcaaact
ggaaataaggttttagtcatgccattcagagatgtggcaacagtgcgttctttggaacgt
gattctcaggtttataacgccgcaaaagctggagacagtgtcactatcaatctacagggt
attgatgcaaatcacgtgatggcggggggtgtcttgtgccaccctgaattcccagttcca
gttgcaaatcatttggaactgaaggtcctcatcttggacaatggcattccaattgtaatt
ggctctcagttagaatttcttgtacaccacgctaaggaggctgcaagagttgtgaggatt
ttgtccttgcttgatccaaagaccggaaaggagaccaaaaaatcacctcgatgtcttctg
gcaaagcagaatgctatgattgaggtggttttgcaaggaatggtttgcattgacgagcat
gctaattgtaaagctcttggaagggtgtccctccgatcatcaggaagaactgttgccctt
ggtctggtgacccgagttatagggaagcaggagtag
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