Solanum pennellii: 107015002
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Entry
107015002 CDS
T04130
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107015002
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107015002
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107015002
NCBI-ProteinID:
XP_015070633
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Position
3:66600976..66603111
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AA seq
403 aa
AA seq
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MGTSSVSLLFLLSFLLLLPSLLASSNPQRVVDEVHRSINGSRRNLGYLSCGTGNPIDDCW
RCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDNAVTPKPGTLRHAVIQSEP
LWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQ
GGNAMVRSSPSHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIMGSTAITISN
NYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWE
MYAIGGSADPTINSQGNRFLAPDIRFSKEVTKHEDAPESEWKNWNWRTDGDLMLNGAYFT
RSGVRTGSSSYAKASSLSARPSSLVANLVSSSGALNCKKGSRC
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgggcacttcctctgtttctctactattccttctttcttttcttctccttctcccgtcc
ctccttgcctcgtctaatcctcaacgagttgtcgatgaagtacataggagtataaatggt
tcaaggaggaatttaggctatttatcgtgtggtaccggaaatccaatcgacgattgttgg
cgttgtgatccgaattgggagaaaaaccgtcagcggttagctgactgtgcaattggattt
gggaaaaacgctattggtggtagagacggtaaaatctacgtggtgaccgattcgggtgac
gacaatgcggtcactcccaagccggggactctccggcacgcagtgattcagagtgagcca
ttgtggattattttcgcgagggatatggttatacagttgaaagaggaattaattatgaat
tcgtttaaaactatagacggaaggggcgctagcgtacacatagctggtggtccgtgtata
acaatacagtacgtaacgaatattattatacacggaattcatatacatgactgtaaacaa
ggtggaaatgctatggtgcggagcagtccatcgcattacgggtggagaactgtgtcggac
ggtgatggagtgtccatatttggtgggagccatgtttgggtggatcattgttctttgtct
aactgtaaggacggtctgattgatgcaattatggggtctacagcaataaccatctcaaat
aattacatgacacatcatgataaagttatgctcttgggacatagtgattcatatactcaa
gataaaaacatgcaagtaactatagcttttaatcactttggtgaaggtcttgtccaaaga
atgccaagatgtagacatggttacttccatgtggtgaacaatgactacacacattgggaa
atgtatgctattggtggaagtgctgatcccactatcaatagtcaagggaacagatttctt
gcccctgatatcaggtttagcaaagaggttacaaagcacgaggatgcaccggagagtgaa
tggaagaattggaattggaggaccgatggggacctaatgttgaatggtgcatattttacg
cgatcaggagttagaactggttcatcaagttatgctaaagcttcgagtttgagtgcaaga
ccgtcttcattagtagccaaccttgtgtctagttctggtgcactcaactgtaaaaagggt
tctcgttgctaa
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