Solanum pennellii: 107015011
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Entry
107015011 CDS
T04130
Name
(RefSeq) vacuolar protein sorting-associated protein 35A-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
spen
Solanum pennellii
Pathway
spen04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107015011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107015011
Membrane trafficking [BR:
spen04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
107015011
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
107015011
NCBI-ProteinID:
XP_015070645
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Position
3:5078657..5088991
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AA seq
790 aa
AA seq
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MTPNGVEDEDKFLASGVAGIQQNAFHMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKY
YELYMRAFDELRKLEMFFKEETKRGCSIVELYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDILKDLVEMCRGIQHPLRGLFLRSYLSQVSKDKLPDIGSEYEGDADTVVDAVEFVL
QNFTEMNKLWVRMQHQGPALEKMKREKERSELRDLVGKNLHVLSQIEGIDLEMYKETVLP
RILEQVVNCKDEIAQGYLMDCIIQVFPDEYHLQTLETLLGACPQLQPSVDIKMVLARLME
RLSNYAALSTDVLPEFFQVEAFAKLNSAIGKVIEAQEDMPIAGVVTLYSSLLTFTLHVHP
DRLDYVDQILGACVKKLSGKGKLKDSIATKQIVALLSAPLEKYKDIDTALKLSNYPHVME
HLDDATSKVMANVLVQTILKNKTCISTDEKVEALFELMKGLIRDLDENLHDEFDEEDFKE
EQNSVSRLIQMLHNDDPEEMLKIICTVKKHIVTGGPKRLPFTVPPLIFNSLKLVRRLQNQ
DENAPEEETSAIPKKIFQILNQIIEALSSVPVPELALRLYLECAEAANDSDLEPVAYEFF
TQAYILYEEEISDSKAQVTAIQLIIGTLQRMHIFGVENRDTLTHKATGYSAKLLKKPDQC
KAVYSCAHLFWVDDQDSIKDGERVLLCLKRALRIANAAQQMSNATRGSSGSVLLFIEILN
KYLYFYEKGVTQITVASIQSLLELITTEMQSENKTADPAADALLASTLRYIQFQKDKGGA
VGEKYESIKS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgacccctaacggagttgaagatgaagataaatttctagcttctggagtcgccggcatt
caacagaacgcctttcacatgcatcgcgctcttgactcaaataatctgaaagatgcactc
aaatattcagctcagatgctgtcggagctccgaacttcaaggctatcacctcacaaatac
tacgagctatatatgcgggcttttgatgaattgagaaagctagaaatgttcttcaaggag
gagacgaagcggggttgctcaattgttgagttgtatgaactcgtgcagcacgctggcaac
attttgcctagactgtatctactttgcacagtggggtctgtgtacatcaaatccaaggag
gctcccgccaaggatatccttaaagacctggttgaaatgtgccgtggtatacaacatcct
ttacgtggactctttctgaggagttacctttcccaagttagcaaggataaattgcctgat
ataggttccgagtatgaaggagatgcagatactgttgtggatgctgtagagtttgtactc
caaaatttcacggaaatgaacaaactctgggttagaatgcaacatcagggacctgctctg
gaaaagatgaaacgcgaaaaagaaaggagcgagcttcgtgatctcgtcgggaagaatctg
catgttctcagtcaaattgagggtattgaccttgagatgtacaaagagacggtgcttcca
agaattttagagcaggttgtcaactgtaaagatgagattgctcagggctatttgatggat
tgcataattcaagtcttccctgatgaatatcacttacaaactcttgaaaccttattgggt
gcttgtccgcagcttcagccatctgttgatatcaaaatggtgcttgctcggctgatggaa
aggctctcgaactatgctgctttaagtacagatgttttacctgagttttttcaagtggaa
gcttttgcgaaactaaacagtgccatagggaaggtgatagaagcccaagaagacatgcct
atagctggagttgtgactttatattcatctcttttaacttttactcttcatgtccaccct
gatcgtcttgattatgtggatcagattttgggtgcatgtgttaagaagctttctggtaaa
ggaaaactcaaagacagtatagcaacaaaacagattgtggcccttctaagtgctccactg
gagaagtataaggatattgatactgcattaaagctttcaaattatcctcatgttatggag
caccttgatgatgcaactagcaaagtgatggctaatgtattagttcaaactattctgaaa
aataaaacttgcatctcaacagatgaaaaggttgaggctctttttgaattaatgaaagga
cttatcagagatttggatgagaatcttcacgatgagtttgatgaagaagatttcaaggaa
gagcagaactctgtttcacgacttattcaaatgcttcacaatgacgaccctgaggagatg
ctgaagataatttgcaccgtgaagaaacatattgtgacaggaggaccaaagaggcttccc
tttacagttcctcccctcatttttaattctcttaagttggtaaggcgactgcaaaaccaa
gatgaaaatgctccagaggaggaaacatctgctatacctaagaaaatttttcagatttta
aatcagataattgaggctctctcaagtgttccagtacctgagctagcactaaggttgtac
ctagagtgtgctgaggctgccaatgactctgacctagagcctgttgcctacgaattcttc
acccaagcttatatactatacgaggaagaaatttcggactctaaagcacaggtgaccgca
atacaattaataataggtactcttcagagaatgcacatctttggtgttgagaacagggac
acgctaacgcacaaggctacagggtactccgcaaaactcctgaagaagcctgatcagtgc
aaagctgtctactcttgtgctcatcttttctgggttgatgaccaggacagcatcaaggat
ggagagagggttttgctttgtttaaaacgagccttaaggattgcaaatgctgctcaacaa
atgtcgaatgcaacccgaggcagcagtggatcagtcttgctctttatagaaattctaaac
aagtatttatatttctatgagaagggtgtcacacagatcactgttgcatccatccagagc
ctactcgagctaataacaactgaaatgcaaagtgaaaataaaacagccgatcctgctgca
gacgctttgcttgcaagcacattgcgctatatccagttccagaaggataaaggtggcgca
gttggtgagaaatatgagtccattaagtcttaa
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