Solanum pennellii: 107015186
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Entry
107015186 CDS
T04130
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107015186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107015186
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107015186
U7-dependent histone pre-mRNA processing factors
107015186
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
107015186
NCBI-ProteinID:
XP_015070863
UniProt:
A0ABM1GGS3
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Position
3:complement(3041615..3060666)
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AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDTSLLQPLSRVASTVDAVLI
SHSDTFHLGALPYAMKQLGLSAPIYATEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SAFQNVTRLTYSQNHYMSGKGEGIVIAPLVAGHLLGGTTWRITKDGEDVIYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAFNALNNQPPRRQRDQEFLDAIERTLNVGGNVLLPVDTAG
RVLELILTLEQHWTQKQLSTPIYFLSYVSSSTIDYVKSFLEWMSDSIAKSFEHTRDNAFL
LRKIKLVINKSALEEAPGPKVVMASMASLEAGFSHDLFVEWAADPKNLVMFTERGQFGTL
ARILQSDPPPKAVKVTMSRRIPLVGEELAAYEEEQNRIKREEALKATLAKEEESKASVGA
EVVTNDPMAVDTNVTHPSSNASGLHSGAFKDVLIDGFVTTSSSVAPMFPFYDNTSEWDDF
GEVINPDDYVVKDDNMEQSFMHVDGDLNGKLDEGSANLILDTTPSKVESSELTVQVKCSL
LYMDFEGRSDGRSIKSILAHVAPLKLVLVHASAEATEHLKQHCLKHVCPQVYAPQLEETI
DVTSDLCAYKVQLSEKLMSQVLFKKLGDYEIAWVDAEVGKTENDMFSLLPLSGPSPPHKT
VLVGDLKMSDFKQFLASKGVQVEFGGGALRCGEYVTIRKVGDASQKVGGAAIQQIVLEGP
LSEEYYKIREYLYSHFYSL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgtcggttcaggtgacgccactctgtggagtatacaatgagaacccactctct
tacctcgtctccatcgacggcttcaatttccttgtcgattgcggttggaatgaccacttt
gatacttctcttcttcaacccctatccagggtggcttcaactgtggatgctgtattgatt
tcacactctgatacatttcatcttggtgccttgccctatgccatgaaacaactcggtctt
tctgctcctatttatgctacagaaccagtgtacaggctagggttactaactatgtatgat
cagtatctctcacggaagcaagtttcagagtttgatttattcaccttggatgacattgat
tcagcattccaaaatgtgaccagattaacctactctcaaaatcattacatgtctggaaaa
ggagaaggaattgtgattgctccactggtagctggtcatctattaggaggtaccacctgg
aggataacaaaagacggggaggatgtcatatacgctgttgacttcaatcaccgcaaagaa
aggcatttgaacggaactgttttagaatcttttgtccgtccagctgttctaataacagat
gcttttaatgctttaaacaatcaacctcctaggcgccaaagagaccaagagtttctggat
gccatagagagaactcttaatgtcgggggaaatgttttactacctgttgatactgctggt
cgagttttggagctcatcctgacattggaacagcactggacacaaaaacagttgtccact
cccatctactttctatcatatgtatcctcaagtactattgactatgtaaagagtttcctt
gagtggatgagcgattcaattgcaaaatcttttgagcacactcgcgataatgcttttctt
ttaaggaaaattaagctcgtgatcaataagagtgctcttgaagaagctcctgggccgaag
gttgttatggcttccatggctagtttagaagctggattttcgcatgacctctttgttgaa
tgggcagctgatccaaagaatcttgttatgttcaccgagagagggcagtttggcacattg
gcacgtatacttcagtcagatccacctcctaaagctgttaaagttaccatgtcacgtaga
attcccttggttggtgaggagttggctgcttatgaggaggagcagaacaggataaaaagg
gaagaagctctcaaagctactcttgctaaagaggaggaatcaaaagcgtctgttggggca
gaagtcgtcacaaatgaccccatggccgttgacaccaatgtcacacatccttcctccaat
gcttctggtctgcacagtggtgctttcaaggacgtgctgattgatggatttgtaacaaca
tcgtctagcgtagccccaatgttccctttctatgataacacctctgagtgggatgacttt
ggtgaagtcatcaatccagatgattatgtggtcaaagatgacaacatggagcagtcattt
atgcatgttgatggagatttaaatggaaaacttgatgaaggatcagctaacctaatcctt
gatacaacaccctctaaagttgaatcttctgagttaacagtccaagtcaagtgttccttg
ttatacatggacttcgaaggtcgttctgatggtcgttcaatcaaatcaattcttgctcat
gttgcgcccttaaagcttgtattggtgcatgcatcagctgaagccactgaacatttgaag
caacattgtctgaaacatgtttgtccacaggtctatgctccacagttggaagaaacaatt
gatgtaacttcagatttgtgtgcttataaggtccaactttctgagaagttaatgagccaa
gtgctttttaagaagcttggagactatgaaatagcatgggttgatgctgaagtggggaag
acggaaaacgacatgttctctttacttcctctttccggaccttctccaccccataaaaca
gttcttgttggagatttaaaaatgtctgatttcaagcagtttcttgccagcaagggcgtt
caggtagaatttggtggtggggctttacgttgtggggagtatgtcaccattcgcaaagtt
ggagatgctagtcaaaaggttggaggtgctgctattcagcagattgtgcttgaaggtcca
ttatcggaagagtactataaaattcgagagtacctatattcacatttttactccctctaa
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