KEGG   Solanum pennellii: 107015323
Entry
107015323         CDS       T04130                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein isoform X1
  KO
K12857  Prp8 binding protein
Organism
spen  Solanum pennellii
Pathway
spen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107015323
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:spen03041]
    107015323
Spliceosome [BR:spen03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    107015323
 Complex C
   U5 SnRNP specific factors
    107015323
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_EIPR1 NBCH_WD40 ANAPC4_WD40 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_SCAP Beta-prop_WDR35_TULP_N eIF2A Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_Nup120_160 WD40_like RMC1_N Nbas_N
Other DBs
NCBI-GeneID: 107015323
NCBI-ProteinID: XP_015071049
LinkDB
Position
3:complement(23142994..23147682)
AA seq 367 aa
MDHRTEMLTSNCSSMQYLHVCVQVKTKMQTESALSVMGPRPMELSVVLPRGPQGLGPNGK
PRTSSLESPIMLLSGHQSAVYTMKFNPAGTIIASGSHDKEIFLWNVRGDCKNFMVLKGHK
NAVLDVQWTTDGSTIISASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCPARRGPPLIVS
GSDDGTAKLWDMRQRGAIQTFPDKFQITAVSFSDASDKICTGGIDNDVKLWDLRRCEVTM
TLQGHQDTITGMQLSPDGSYLLTNAMDCTLRIWDMRPYAPQNRCVKILEGHQHNFEKNLL
KCSWSPDGSKVTGGSSDRMVYVWDTTSRRILYKLPGHTGCVNECVFHPNEPIVGSCSSDK
QMYLGEI
NT seq 1104 nt   +upstreamnt  +downstreamnt
atggaccatagaactgagatgttaacttcaaattgctcctcaatgcaatatttgcatgtt
tgtgtgcaagtgaagaccaagatgcaaactgaaagtgctttatcagttatggggccaagg
ccaatggagttgtctgttgtgcttcctaggggtccgcaaggacttggaccaaatggaaaa
ccacggacatcaagcttggagtcaccaattatgttgctatctggacatcaaagtgcggta
tatactatgaagttcaatccagcaggaacaatcattgcatctggttcacatgacaaagaa
atctttctttggaatgtacgtggtgattgcaagaattttatggtcttgaaagggcacaaa
aatgcagttcttgatgttcaatggactactgatggatcaacaataatatcagccagcccc
gataagactgttagggcatgggatgtagaaaccgggaaacaaataaagaaaatggctgaa
cattcctcgtttgttaactcatgctgcccagctcgtaggggccctcctcttattgttagc
ggatctgatgatggcactgctaaactttgggatatgcgccaaagaggagccatacaaaca
tttccagacaaatttcaaattactgcggtcagtttctctgatgcctccgataaaatctgc
acaggtggtattgacaatgatgtaaaattgtgggatttacgaaggtgtgaagtaactatg
actcttcaaggccatcaagatactataactggtatgcagctgagtcctgatgggtcttat
cttcttactaatgccatggattgcacgcttcgcatatgggacatgcgcccttatgccccc
caaaatcgatgtgtcaagatcttggaaggccaccaacacaattttgaaaagaacttactg
aaatgtagttggtcgcctgatggaagtaaggtaacaggtgggagttctgatcgcatggtt
tatgtttgggacacaacatctaggcggatcctgtataagctccctggacacactggatgt
gttaatgaatgtgtttttcatcctaatgaaccaattgttggatcttgcagtagtgacaaa
cagatgtatcttggtgagatttga

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