Solanum pennellii: 107015413
Help
Entry
107015413 CDS
T04130
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
spen
Solanum pennellii
Pathway
spen04120
Ubiquitin mediated proteolysis
spen04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107015413
04120 Ubiquitin mediated proteolysis
107015413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spen04121
]
107015413
Enzymes [BR:
spen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107015413
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107015413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_5
zf-RING_11
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
107015413
NCBI-ProteinID:
XP_015071161
LinkDB
All DBs
Position
3:complement(63267708..63275184)
Genome browser
AA seq
530 aa
AA seq
DB search
MMRLQTYAGLSLIATLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVVMCILWQM
TKKIFLGPLREAEVERLNEQSWRELMEILFAITIFRQDFSVTFLAMVTALLLIKGLHWLA
QKRVEYIETTPTVTRLSHIRIVSFLGFLLFIDSLFLYDSMNYLIQTRQASVSLFFAFEYM
ILATTTVSTFVKYVFYISDMLMEGQWENKPVYTFYLELIRDLLHLSLYLCFFMVIFMNYG
VPLHLIRELYETFRNFRSRVADYVRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPTENGTNVAGSRPDVQQGPGSSAASA
SQGSQANTTPSNNVSQHQARIQAAAAAAAVYQKSYVYPSVPTLAWSPGYAPVPPSYSTVG
SSANVLSDGERALNEQSSHNQLANMPFAQYPQSGFLPFQYPGANNLGIPTSQLEAHKILL
QQQIEVLQTQLKLLEHPNIQKKADDLGISDSKGKAILSESSRGHTEGAEI
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttacaaacgtatgcggggcttagcttaatagctacactggctgttatttat
catgcttttaatagcagaggacaattttacccagcaatggtttatctgtcgacgtccaag
atcagtcttgtgcttcttctcaatatgggtcttgttgtcatgtgcattttgtggcagatg
acaaagaaaattttccttggtccacttcgcgaggctgaggtggagaggctgaatgaacag
tcttggcgggaactcatggaaatactttttgccatcacaatttttcggcaggatttctct
gttacctttcttgcaatggtaactgcactcttgcttatcaagggtttgcactggttggct
caaaagagagttgagtacattgaaacaactcctactgttactagattgtcccacattcgc
atagtatccttcctgggctttctcctcttcatagacagtctctttttgtacgactcgatg
aactatttgatacagacaagacaggcatctgtttctctcttctttgcctttgagtacatg
atacttgcaacaacaactgtctcaacgtttgtaaaatatgtcttctacataagtgacatg
cttatggaaggacaatgggagaataagcctgtctataccttctacttagaacttatccga
gacttgctccacttgtctctttacttgtgcttcttcatggtgattttcatgaactatggt
gtgcccctacatttgattcgggagctttatgagacattccgcaacttcaggagtcgagtt
gccgattatgtacgctatcggaagatcacttcaaatatgaatgaccgttttccagatgct
acaccagaggagctcaatgcaagtgatgctacctgtatcatttgtcgtgaggagatgacc
actgctaagaaactcatttgcggtcatctgtttcatgtgcattgcctccgctcatggcta
gagcgtcaacacacctgtcctacctgcagagcccttgttgtgccaactgaaaatgggaca
aatgtggcaggatcacgaccagatgtgcaacaaggccctggatcaagtgcggcaagtgca
tctcagggttcgcaagcaaacaccacgccaagtaataatgttagccagcaccaagctaga
atccaagctgctgcagcagcagcagcagtttatcagaagtcttatgtttatccttctgta
ccaacactagcgtggtctcctggatatgctccagttcctccctcctatagtacagtgggc
agttctgccaatgtgctctcagatggggaacgggcattgaatgaacaatcatcgcacaat
caattagcaaatatgccctttgctcaatatccacaatccggttttctcccttttcaatat
ccaggtgctaacaaccttggtattccaacgtctcaacttgaggcccataagatactttta
cagcaacaaattgaggttctgcaaacccagctcaagcttttagagcatccaaacatacaa
aaaaaagcagatgatttaggaatttctgatagtaagggaaaagcaattttgtcagagagt
tctcgaggacataccgaaggtgcagagatttga
DBGET
integrated database retrieval system
