Solanum pennellii: 107015417
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Entry
107015417 CDS
T04130
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B isoform X1
KO
K07466
replication factor A1
Organism
spen
Solanum pennellii
Pathway
spen03030
DNA replication
spen03420
Nucleotide excision repair
spen03430
Mismatch repair
spen03440
Homologous recombination
spen03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107015417
03420 Nucleotide excision repair
107015417
03430 Mismatch repair
107015417
03440 Homologous recombination
107015417
03460 Fanconi anemia pathway
107015417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spen03000
]
107015417
03032 DNA replication proteins [BR:
spen03032
]
107015417
03400 DNA repair and recombination proteins [BR:
spen03400
]
107015417
Transcription factors [BR:
spen03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107015417
DNA replication proteins [BR:
spen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107015417
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107015417
MMR (mismatch excision repair)
107015417
DSBR (double strand breaks repair)
HR (homologous recombination)
107015417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
Motif
Other DBs
NCBI-GeneID:
107015417
NCBI-ProteinID:
XP_015071164
UniProt:
A0ABM1GHK0
LinkDB
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Position
3:complement(69274957..69278453)
Genome browser
AA seq
625 aa
AA seq
DB search
MAKMVSPDAISTILANPSPDSSSDLPEIIVQVVDLKPTGNRYMFSANDGKMKIKGILQSS
LSSEVISGSIQNLGLIRIIDYTLNDIPTKNEKYLIVTKCEVVSPALEVEYKAEVKSEDTG
IVLKPRQEETGIVLKPKQEETGIVLKPKQEYQTKSAAQIVHEQSGNMAPTARMAMTRRIQ
PLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAKK
FFDKFELGKVYYISKGTLRVANKQFKTVQNDYEMNLNENSQVEEASNEEAFIPEIKFNFV
PIDELGPYVNGRELVDVIGVVQSVSPTMSIRRKSNNETVPKRDITIADETKKTVVVSLWN
DLATHVGQELLDMADKSPVVAIKSLKVGDFQGVSLSALSKSNIVVNPDLPEAKKLRSWYD
SEGKETSLASIGSGMSPSAKSGARSMYTDRVSLLHITSNLSLGEEKPVFFSLKAYISFIK
PDQTMWYRACKTCNKKVTEAFGSGYWCEGCQKNDAECSLRYIMALKVSDASGEAWLSTFN
DQAEKILGCSADELDKLKSEEGETAYQMKLKEATWVPHLFRVSVAQQEYNNEKRQRITVR
AIAPVDYAAESKYLLEEMSKMNIAM
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaatggtcagcccagatgctatttcaactattttagcgaacccatcgccggat
tcttcttcagatcttcctgaaattattgttcaagtagtggatctcaagcccactggcaac
agatacatgttttcagccaatgatgggaaaatgaagattaaggggattcttcaatctagt
ttgtcatctgaagttatatctgggtctatacagaacctgggtcttattaggattattgat
tacaccctcaatgatatcccaactaagaatgagaagtacttgattgtaactaaatgtgag
gttgtgtctcctgctcttgaagttgagtacaaggctgaagtgaaaagtgaagacactggc
attgtcttgaagccaaggcaggaagagactgggattgttttgaagccaaagcaggaagag
actgggattgttttgaaacctaaacaggaatatcaaactaaatctgctgctcaaattgta
catgaacaaagtggaaacatggcaccgactgctcgaatggcaatgacaagaagaattcag
ccacttgtctctttgaacccttaccaaggaaattggaccattaaggttcgagtaactagc
aagggtaatatgcgaacctacaagaatgctcgcggagaaggctgtgtgttcaatgttgaa
ttgactgatgaggatggtacccaaatacaagctacaatgtttaatgaagctgcaaagaag
ttttttgacaagtttgaattggggaaagtatattacatttcaaagggaactcttcgagtt
gccaacaagcaattcaaaactgtacagaatgattatgagatgaatttgaatgaaaattcc
caagttgaggaggctagcaatgaagaagcttttattccagagataaagtttaactttgtc
ccaattgatgaattgggcccttatgtcaatggcagggagcttgttgatgttattggggtg
gtccaaagtgtatctccaacaatgagcatacggaggaagagcaacaatgagacagtccca
aagcgtgatataactattgcagatgagacgaagaagactgttgttgtttctctgtggaat
gatcttgccactcatgttggacaagaactgctagacatggctgataaatctcctgtagtt
gcaatcaaatcccttaaagttggagacttccaaggagtgtctttatcagcattaagcaaa
agcaatattgttgtgaatcctgatttacccgaagccaaaaaattgagatcttggtatgat
tctgaaggtaaagaaacttcattggcatctattggttctggaatgagcccttctgccaag
agtggagcaagatctatgtataccgatagggtttccttgcttcatataaccagtaacctg
tcccttggtgaggagaagcctgtgtttttcagcttgaaagcatacataagtttcattaag
cctgatcaaaccatgtggtatcgggcttgcaagacatgcaacaagaaagttactgaagct
tttgggtctggatattggtgtgaaggatgccagaagaatgatgcagagtgcagtttgaga
tatataatggcattgaaagtgtctgatgcaagtggtgaagcatggctctctacattcaat
gatcaagcagagaaaatacttggatgctctgctgatgaacttgacaagctgaaatcagag
gaaggagaaactgcatatcaaatgaaattgaaagaagctacatgggttcctcaccttttc
cgggtcagtgttgcacaacaagaatacaacaatgagaaaaggcaaaggataacagtcagg
gctattgctccagttgattatgcagcagaatccaaatacttgctggaagaaatgtctaag
atgaacattgctatgtaa
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