KEGG   Solanum pennellii: 107015803
Entry
107015803         CDS       T04130                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
spen  Solanum pennellii
Brite
KEGG Orthology (KO) [BR:spen00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:spen03009]
    107015803
Ribosome biogenesis [BR:spen03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    107015803
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_EML Beta-prop_TEP1_2nd EIF3I WDR55 NBCH_WD40 Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_IP5PC_F Beta-prop_VPS8 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st WDR54 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_SCAP Beta-prop_LRRK2 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_BBS7 Ge1_WD40 Beta-prop_SPT8 VPS11_N PROPPIN Death_2 Beta-prop_WDR19_2nd
Other DBs
NCBI-GeneID: 107015803
NCBI-ProteinID: XP_015071703
LinkDB
Position
4:73939985..73944813
AA seq 448 aa
MTEPELVIASSPTDAGIGCWDLHTGAEHLRYRTCSSPSHGLTCVGGRFLASSQLRETKSS
SGSILYWSWNKPQVEVKSFPAEPINPLVSNSEGTYIAGGGASGEIYLWQVATGKLLKKWH
AHYRAVTCLLFNDDQSLLISGSEDGSVRVWSLIMVFDDLLRGKARQPYEFSFSEHSLKVT
DVVIGYGGANAIIVSASEDRTCKVWSLSRGKLLRSIVFPSIIDAIALDPGEDVFYAGGRD
GKIYIAALNAVADPNNNYGLHILGFLSEQSKAITCLALSTDSSLLISGSEDGMVRVWNTK
NHNITRIFRHAKGPINNVVVVRQSSLMSNRGTMNSQMPSFKRNGVSLPPPLEKCANSADE
NDYKAVIGPRIDPDRCVEASYISIQSLSNQILELQRQGSSAAAEMEIERLKLDRSRSMQM
IQQWETKFQSLHQFCVTELLDGEKAGNA
NT seq 1347 nt   +upstreamnt  +downstreamnt
atgacggagccggaattggtaatcgcctcatcgccgaccgacgccggtattggctgttgg
gacctccataccggcgccgagcatctccgatatcgaacttgctcctcaccttctcacggc
ctcacctgtgtcggcggccgctttctggcctcctctcaactccgtgaaactaaatcttcc
tcaggatctatcctgtactggtcatggaacaagcctcaagtggaagttaaaagcttccca
gccgaacctataaatccacttgtttccaatagtgagggaacttatatagccggaggaggt
gcatccggcgaaatttacttgtggcaggttgcgactgggaaactgcttaagaagtggcat
gctcactatagggcggttacttgcttgttattcaatgatgatcaatcacttctgatttct
ggttcagaggatggatctgttcgagtttggtctcttataatggtatttgatgacttattg
agaggtaaagcaagacaaccttatgagtttagtttctctgagcattctttgaaggtgact
gatgttgtgattgggtacggtggagctaatgcaattattgtttctgcttcagaagataga
acttgcaaggtttggagtctttctagaggaaaattgttgagaagcatcgtgtttccatca
ataattgacgcaattgcattagaccccggagaagatgtcttctatgctggtggtagagat
gggaaaatatacatagctgcactaaatgctgttgcagaccccaacaataattatggattg
cacattcttgggtttctctctgagcaaagcaaggctattacatgcttagcattaagtacg
gacagcagcttgctaatttctggatcagaggatggcatggttcgagtgtggaacaccaaa
aaccataacatcacccgaatttttaggcatgcaaaaggtccaattaacaatgttgtagtt
gttagacaatcatctcttatgagtaacagaggaaccatgaattcccaaatgccttctttt
aagagaaacggggtatcattacctccaccattggaaaaatgtgctaactcagctgatgaa
aatgactataaggcagtaattggcccccggatcgatcctgatagatgtgttgaagcttca
tatatcagtattcagtccctaagtaatcaaatcttagaacttcagagacaaggttcttct
gctgctgctgaaatggagatcgaaaggctaaagctcgaccgcagcaggtccatgcaaatg
attcagcagtgggaaacaaagtttcaaagtctacatcagttttgtgtaaccgagctatta
gatggggaaaaagctggaaatgcttag

DBGET integrated database retrieval system