Solanum pennellii: 107015963
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Entry
107015963 CDS
T04130
Name
(RefSeq) protein CHROMATIN REMODELING 25
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107015963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107015963
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107015963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SLFN-g3_helicase
AAA_22
DUF7231
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
107015963
NCBI-ProteinID:
XP_015071908
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All DBs
Position
4:65928427..65942130
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AA seq
956 aa
AA seq
DB search
MEDEGEALSASSDESLREPEEDIDCVSNSGDDDDDDDEWNVASQAGTSSPDEDRKSQNVD
ALVRGNLIVKRQSLLPRVYSVTDAAANLRKPFKPPSSNGYSSSNEHLARRLCARKRFVPW
GSTSPTLIAITNRLKAPEAAEIDVVEDNLELPPGVEPLVLWQSEEIVEEGCSLVPIIVDP
LLVRFLRPHQREGVQFMFDCVSGALSSFNINGCILADDMGLGKTLQSITLLYTLLRQGFD
GKPMVRKAIIVTPTSLVSNWEAEINKWVGERVKLVALCESTRDDVVSGIESFINPRSNIQ
VLIVSYETFRMHSSKFSNSGSCDLLICDEAHRLKNDQTLTNRALASLACKRRVLLSGTPM
QNDLEEFYAMVNFTNPGILGDAAHFRRYFETPIICGREPTATEEEKKLGSDRSAELSSKV
NQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAIAEEAKQSKILA
YITALKKLCNHPKLIYDTIRGGSPGTSGFEDCIRFFPPEMFSGRCGSWTGGAGLWVELSG
KMHVLARLLAQLRQKTDDRIVLVSNYTQTLDLFSQLCRERRYPFLRLDGTTSISKRQKLV
NHFNDPAKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRV
YIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSDIQGNCLSAEDLRDLFTFHDSRSE
IHEKMSCDRCQPNAVMPDDNIIADLHTQGHQPDQEDIGGFAGVAGCLRTLQSSEWQIGAP
KEEDLASWGHHFSPKSVPDVIFQSAAGDEVSFVFTCQVDGKLVPVESTVKSKQEVENRDS
PHFKEMLMRKATFSSPRQTPSLKTLSSSKLSSEKENSFPKQDLILQAQSQALSASTPSGT
SMSTFPAFFKPLQKPRSKLNKPLEDTKIYEKSKLSSENLLPQKRLAPDYIYDDDFA
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgagggagaggctctttcagcatcgagcgacgaatcccttagagagccagag
gaggacatcgattgcgtatctaatagtggcgacgacgacgacgatgacgatgaatggaat
gtagcatctcaggcgggtaccagttcgccagatgaagaccgcaaatcgcaaaatgttgat
gctcttgtgaggggtaaccttattgtgaaaagacagtcactacttccacgagtctattca
gtgacagatgcagcagccaatctccgaaagccattcaaacctccaagctccaatggttac
agtagtagcaatgagcatctagctcgccgtctttgtgctcgtaaaaggtttgtgccatgg
ggttcaacaagtccaacattaattgctattacaaacaggctgaaagctccagaagctgct
gagatagatgtggtggaagacaatttagaactgccacctggtgttgaacctctggtgttg
tggcagtctgaagaaattgtggaggaaggctgtagtttagttcctataattgtggatccg
ttgcttgttaggttccttcgtcctcatcaaagggaaggggtccagttcatgtttgactgt
gtgtcaggtgcacttagtagcttcaacattaatggatgcattttagctgatgatatgggt
ttggggaagactctgcaatcaattacactactttacactcttcttcgccagggatttgat
ggaaaacctatggtcaggaaggcaataattgtgacccctactagtctcgttagtaattgg
gaggccgaaatcaataaatgggttggagaaagagttaaacttgttgctttatgtgaaagc
accagagatgatgttgtttctggcatagaaagttttatcaatccccgtagtaatatacag
gttttaattgtttcctacgagacatttcggatgcattcttcaaaattcagtaattctgga
tcatgcgaccttctcatatgtgatgaggctcacagattgaaaaatgatcaaacactgact
aatcgagcattggcttctctagcatgcaaacgccgggttctgctatcagggactccaatg
caaaatgatctagaagagttttatgccatggttaatttcacgaatccgggtatcttgggt
gatgctgcacacttccggcgttattttgagacaccgataatatgtggtagggaaccgact
gccacagaggaagagaagaaactaggatctgaccgatctgctgaactgagttccaaagtt
aatcagtttattttgaggaggacaaatgcgttattgtcaaaccacctaccgccaaagata
attgaagttgtttgttgcaagctgacaccgctccagtcagagctgtacaatcattttata
cattcaaaaaatgtgaaacgagctatcgctgaagaagcaaaacaatcaaaaatcttagct
tacataacagctctgaagaagctttgcaatcatccaaagctaatatacgacacaatacga
ggtggaagtccagggacatctggttttgaggactgcatccgctttttccctccagaaatg
ttctctggaaggtgtggctcatggacgggtggcgctgggttgtgggttgaactttcaggg
aaaatgcatgtcttagcccggctactggctcaacttcgtcagaaaacagatgataggatt
gttttggtttccaactacacacagacactggaccttttctctcaattatgccgtgaaagg
agatatcccttcttaagacttgatggaactacatcaattagtaaaagacagaagctagtt
aatcatttcaatgatccagcaaaggatgagtttgcgtttctgttgagcagcaaggctgga
ggttgcggtcttaatttgattggtgggaaccgtttggttttatttgatcctgactggaat
ccagccaatgacaaacaggctgctgcaagagtctggagagatggacaaaagaagagggtc
tacatctataggtttttgagtactggaactattgaagaaaaggtttatcagcgtcagatg
tcaaaggaaggtcttcagaaagttattcagcaggaacaaacagattctgatatccaggga
aactgtctctcagcagaagacctgcgggacctgttcacatttcatgatagtaggtctgag
attcatgaaaaaatgagctgcgaccgctgtcaaccaaatgcagtgatgccagatgacaac
atcatagctgacttgcacactcagggtcatcagcctgatcaagaggatattggggggttt
gcaggtgtagctggttgcttgcgtacattacaaagctcagagtggcagataggagctccc
aaggaagaggacttggccagttggggtcatcatttttccccaaaatcagtaccagatgta
attttccagtccgcagcaggagatgaggtttcgtttgttttcacttgccaagtggatggg
aaactcgtgcctgttgaatcaactgtaaagtcaaaacaagaggtggaaaatagagattca
cctcatttcaaagaaatgcttatgagaaaagccacattttcatctccccgtcaaacacca
tcactaaagacgttgtcatcaagcaagctgtctagtgagaaagaaaactcatttccgaaa
caggatttgatattgcaagcacaatcacaagcactgtcagcatcaactcctagtggaact
tctatgagtacattccctgcattttttaaacctttgcaaaagccaagaagcaaattaaat
aaacctttagaagatactaaaatatatgagaagagcaaactctcttccgagaatctgttg
ccccaaaagagattagctcctgattacatatatgatgatgattttgcctag
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