Solanum pennellii: 107016105
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Entry
107016105 CDS
T04130
Name
(RefSeq) uncharacterized protein LOC107016105
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107016105
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107016105
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
DUF5647
Motif
Other DBs
NCBI-GeneID:
107016105
NCBI-ProteinID:
XP_015072075
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Position
4:complement(4892436..4903154)
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AA seq
684 aa
AA seq
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MKKVWWKRKWSYFLGLLGIFLQLFLLINECAATRRINEKNIPLDLQTYPPVKFIRLNKHV
LVDNGLFSITFSVPDGMVVNIKYNGIDNLLENKNKENNRGYWDIVWNKAEKQGNIFDKLE
GTKFEVIFQDENQVELSFTRILKTLNSSSLSMNIDKRFIILRGSSGFYSYAIFERLEGWP
DIDVYQGRMAFKLNEKLFSYMAISDERQRIMPTAQDRAMGRQLDYKEAVLLTGPSTSFLK
GEVDDKYQYSVENKDNKVHGWISPSPKTGFWMITPSSEFQAGGPVKQDLTSHTGPITLSM
FFSTHYAGEIIGLRFRNGEPWKKVFGPIFIYLNSVPNEEDILTLWTDAKEQMLIETEKWP
YEFPLSQDFVGADQRGIVCGRLLVNDSYMSKTLITPNSTFIGLAAPGDVGSWQIENKGYQ
FWTQTNNEGYFFINNIIPGNYSLYAWVPGFIGDYKYKDYISIIPGSRIRLQTLVYYPPRN
GPTLWEIGIPDRTAEEFFIPNPQPKLQNQLCIAHYEEKFRQYGLWDRYTEIYPNNDLIYI
VGSSNYQTDWFFAHVNKYIYKDNGDKTYIPTTWQIVFDLQEVKDFSNYTLQLALASSNEA
ELQIRINDQNPEHAPHFTTGSIGKDNAIARHGIHGLYRMYSIDIPSDLLTIGSNTMFLKQ
SRGSSSWSGLMYDYIRLEGPLKNE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagtttggtggaagagaaaatggagttattttcttggattgttgggaattttt
cttcagttatttttgctaattaatgaatgtgcagcaacaaggagaatcaatgagaagaat
attccattggatttgcaaacctatcctcctgtgaaatttattagactaaataaacatgtg
ttggtggataatggcctattcagcatcacattttctgttccagatggaatggttgttaat
ataaaatacaatggcattgataatttattggaaaataaaaataaagaaaataatagaggg
tattgggatattgtttggaataaagcagaaaaacaagggaacatttttgacaaacttgaa
gggacaaagtttgaagttatatttcaagatgaaaatcaagtagagctttcattcacaagg
atattgaagacattaaattcctcaagtctttctatgaatattgacaaaaggtttataatt
cttagggggagtagtggcttttattcctatgcaatttttgagcgtttggaaggatggcca
gatatagatgtttatcaagggagaatggcctttaagctaaatgaaaagttgttctcttat
atggctatttcagatgaaaggcagaggataatgcccacggcccaagatcgagcaatgggc
cgacagcttgactacaaagaagctgtacttcttacaggcccatctacttctttcctcaaa
ggagaggtggatgataaatatcaatactctgttgaaaacaaggataacaaggtccatggg
tggataagcccaagcccaaaaactggattttggatgattacaccaagtagtgagttccaa
gcaggtgggcctgttaaacaagacctcacttctcacaccggcccaataacattatcgatg
ttcttcagtacacattatgccggagagattatagggctcagatttcgaaatggagagcca
tggaagaaagtctttgggccaatttttatttacttaaactccgtgccaaatgaggaagac
attctaacactatggacagatgcaaaagaacagatgttaatcgaaaccgaaaagtggccg
tatgagttccctctttcgcaagatttcgttggagctgatcaacggggtattgtatgtggc
cgattactcgttaacgatagctacatgagtaaaacacttatcactccaaattcaactttc
attgggttggctgcacctggagatgttggatcatggcaaattgaaaataagggttatcag
ttttggactcaaaccaataatgaaggatatttctttattaacaatatcatccctggaaat
tatagtttgtacgcttgggtccctggatttattggtgattacaaatacaaggactacatc
agcatcatcccaggatcaagaattaggttacaaactcttgtgtattaccctccaagaaat
ggtccaacattgtgggaaataggcattccagatagaactgctgaagaattcttcatccct
aatccacaaccaaaacttcaaaaccaattatgtattgcacattatgaagaaaagtttagg
caatatggattatgggatcgttatacagaaatataccctaataatgatttaatctacatt
gttggatctagtaattatcaaacagattggttctttgctcatgtgaataaatatatttac
aaggataatggggacaaaacatatataccaactacatggcaaattgtgtttgatcttcaa
gaagtaaaggatttctcaaattatactcttcaactagcattagcatcatcaaatgaagct
gaattacaaatccgaataaacgatcaaaatccagaacatgctcctcattttacaacaggg
tcgataggcaaggataacgcgattgcaagacatggaattcatggattatatcgaatgtat
agtatagatatacctagtgatcttctaactattggaagtaatactatgtttcttaagcaa
agtagaggttcgagctcttggagtggactcatgtatgattatattcgtcttgaaggaccc
ctaaaaaatgagtaa
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