Solanum pennellii: 107016915
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Entry
107016915 CDS
T04130
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107016915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107016915
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107016915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_11
Motif
Other DBs
NCBI-GeneID:
107016915
NCBI-ProteinID:
XP_015072716
UniProt:
A0ABM1GL71
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All DBs
Position
4:64280023..64284429
Genome browser
AA seq
1038 aa
AA seq
DB search
MDSGDDDSVSKRRTRQQSIKKRAKLNKKRNRLSRKTCSVNVNNGEDVSRGRKRKMVEPSR
GDKRKSKNARVVRNVVNNGRRKFSPGTCESITKRPFIEEMSDDDSEEESDPDFVIVEEEE
EAVNTSGSSSNVGLTSPMLNAAEEVVSSTSSMCSTNDESEDLTDTTSFSESEFESSSDDI
DSDDPKDKNNRVVESSSSDDISSDFDDEESEDDEVSEDDDLSYPKNNEEGKKKSNEGLVA
QLVVGGETNKKGQSCILQPRSLSKLKEKKLNDGNFSRPILLSDDEESKSLSEEDCEVDDS
AKNIVQKDVTQKTRKNTLEDSEFLKFVVDSIINVDDHDKFTPQEKELVPVKETLPLVFRF
EDEEPLPPEKEEWEKEIENLFVEMDMCILESDIGFTNQSVSLMQDGDISGCEMGNHHLVL
DEQIGLICKVCSHVHLEIKYIFPPFAERTRGRNGRKYCRESPSLLDVDDFRFSDSSTVHD
SPVYEEGTVWDLVPSNAKATMFPHQRGGFEFMWKNIAGDIILERLREPISDGKGGCIISH
PPGTGKTRLTIVFLQSFLKLFPKCRPVIIAPSNLLLNWEAEFHKWEVNIPFHNLNNKDFS
FQEDEATASVFHCLSHAGRKNPQLIRMVKLRSWAKSKSVLGISYDLFRILTGGDGDGYAK
EIREILLKLPGLLILEEGHTARNEQSLVWKALKKVETEKRILLSGTPFQNNIKELYNTLY
VVSPKFASDLEQKWASLSSSIDKNARALEELRDIISPFVHRCSENVKKVSLPGIRDTVIY
LKPTDLQKELLKRIPENPGSFYEQNLVSLISVHPSLVAKRKEFSESVSHLKEQRCRLDPD
IGVKMKFVVELIKLCGGPKERVIIFSQLLDPLNLIKEQLNSLFGWTLGREILYMDGKLDV
KQRQLSINSLNDPNSDVKVLLASIKACSEGISLIGASRVVLLDVLWNPSVQQQAISRAYR
NGQTKVVHVYNPVISKWEVDKIEQQTRKKYHSDVLLSRNEVKMDPSRSVSEDDILESMVK
HEGLRHIFEKLSHAPCTT
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggatgatgactctgtttcaaagaggaggactagacaacaatctattaaa
aaaagggccaagttaaataagaagaggaacagattgagtcgaaagacttgttctgtgaat
gtgaataatggagaggatgttagtcgtgggaggaaaagaaaaatggtggagccttcgcga
ggtgacaagagaaaatcaaaaaatgcaagggtggtaagaaatgtggtaaacaatgggagg
aggaagtttagtccaggaacttgtgagtccatcacgaaacggcctttcatcgaggaaatg
tctgatgatgattctgaggaggagagtgatcctgatttcgttatcgttgaggaggaggag
gaggctgtaaatacgtcaggatcttcgtccaatgttgggttaacgagtcctatgttgaat
gcagcagaggaggttgtttcatctacctcaagcatgtgtagcacaaatgatgaatctgaa
gacttgactgatacaacctcattttctgagtcggaatttgaatcttcaagtgatgatatt
gatagtgatgaccccaaagacaagaataaccgggtggttgaatcatcgagttcggatgat
ataagcagtgattttgatgatgaggaatcagaagatgatgaggtatcagaagatgatgat
ctgagctatcctaaaaataatgaagaaggaaaaaagaaatcaaatgagggactagtagct
cagcttgttgttggcggtgaaacgaacaagaaaggccaatcatgtattcttcagccacgc
tcactttctaagctgaaagagaagaagttaaatgatggaaattttagtagaccgattctt
cttagtgatgacgaggagtctaaatccttgtccgaagaggactgtgaggttgatgactcc
gcgaaaaatattgttcaaaaggatgttactcaaaagactcggaagaacactcttgaagat
tctgaatttctgaagtttgttgttgattctataataaatgttgatgatcatgataaattc
actcctcaagagaaggaacttgttcctgtcaaagaaacacttcctttagtattccggttt
gaagacgaggaacctctccccccggagaaagaagaatgggaaaaggaaatcgaaaatctt
tttgttgaaatggacatgtgtatcttagaatcagatattggctttacgaatcaatctgtt
tcactgatgcaggatggagacataagtggctgtgagatgggaaaccaccatcttgtgcta
gatgaacaaattggactcatctgtaaagtttgttcgcacgtgcatttggagatcaagtac
atcttccctccttttgctgagagaactcgagggaggaatggaagaaaatattgtagagag
tcgccatcactcttggatgttgacgacttcagattttctgattcttccacagtccatgat
tctcctgtttatgaagaaggaacagtttgggatttagttccgtcaaatgccaaagcaaca
atgtttcctcatcaacgtggaggatttgagttcatgtggaaaaatattgctggagatata
attcttgagagactgagagagcccatatctgatggtaagggaggatgcataatctcacat
ccacctggaaccggaaaaactcgactcaccatagtatttcttcagtcatttctaaagttg
tttccaaagtgtcggcctgtaatcattgctccttccaatctgcttcttaactgggaagcc
gagttccataaatgggaggtgaacattcccttccacaacttgaacaacaaagatttctct
ttccaggaagatgaagctactgctagtgtcttccactgtttatcccatgccggaagaaaa
aatccacagcttatacgtatggtgaagctgagatcctgggctaaaagtaagagtgttttg
ggaatcagctatgacttgttcaggattctaacgggaggtgatggagatggttatgccaaa
gagattagagaaatccttctaaaattacctggtcttctgattcttgaagaagggcacact
gctcggaatgagcaaagccttgtgtggaaagctttgaaaaaagttgaaaccgagaagcgc
atacttttgtctggtactccgttccagaataacatcaaagagttgtacaatactctctat
gtagttagtccgaagtttgcttcagatttggagcagaaatgggcttctcttagtagttcc
attgacaaaaatgcccgagctttggaagagcttagggatattatttcaccatttgttcat
agatgtagtgaaaatgtaaagaaggtaagtcttccgggtataagggatacagtgatatac
ttgaagccgacagatttgcagaaggaattgcttaaaagaattccagagaatccaggctcg
ttttacgaacaaaatctggtgtctctgatctccgtccatccttcattagtggcaaagagg
aaggagttctctgagtcagtaagtcatctaaaagaacaaagatgtcggttggatccagat
attggagtgaaaatgaaatttgttgtggaactaatcaaactctgtggtgggccgaaggag
agggttataatatttagccagttacttgatcctctaaacctgatcaaggagcaactcaat
tctctcttcggctggactttaggccgcgagattctctatatggatgggaaacttgatgta
aagcagcgacagctatcaataaattctcttaatgaccctaacagtgatgtaaaagtgctt
cttgcatcgataaaagcatgttcggaaggaataagtcttataggggcctcaagagtggtt
ttgcttgacgttctctggaatccctcagtacagcagcaagccatcagtcgagcctacaga
aatggtcagactaaagttgtgcatgtttacaatccagtgatatcaaaatgggaggttgac
aagatcgaacagcagacaagaaaaaagtatcattcagatgtacttttgtctaggaatgaa
gtcaagatggatccttcacgttccgtttcagaggatgacatactagaatccatggttaag
catgagggcctccgtcatatttttgaaaaactatctcatgcaccatgtactacatga
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integrated database retrieval system
