Solanum pennellii: 107017642
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Entry
107017642 CDS
T04130
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107017642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107017642
03036 Chromosome and associated proteins [BR:
spen03036
]
107017642
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107017642
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107017642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
107017642
NCBI-ProteinID:
XP_015073322
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Position
4:1084403..1097451
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AA seq
994 aa
AA seq
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MFGSTNAFGQSSSSPFGSQSGFGQTSNNPFAPKPFGSTNPFGSQSGGSFFGSTSTGVFGT
PQSSSPLGSTSVFGASSSPAFGASTTTFGSSSPAFGSSSVFGQKPAFGGFGSSSAQTSPF
GSSFQQSQPAFGSGLFGSSTPFGTSSQPAFGTPSTPTFGSSTTPAFGAPTSTPAFGTSST
PAFGSTSNPTFGSTSSPFGVTNPPVFGSGTPSFGTTTASAFGSTSTPAFGTPSAPSFSFG
SSPAFGQSTSAFGSSPFGTTTSAFGAQSSAFGAQTSASSFGNPSFGQSAVGGQRGGTRVA
AYQATPDADNSSGTQPAKLESISAMPVYKEKSHEELRWEDYQLGDKGGPAPAGQSTGGIN
FGSSAFASSSTSPFGQSSANPFTSSTSSNPFAPKPSTFSTPNFGVPTTPAFNTSAFPSSN
TSNPFGSTSSTSPSLFGSTSAFGQSTSPTLFGSASASGFGSSTSIFGSSSAQTTASAFGP
SLSFGNTQSSPLFQSTTPSFGQTNSAFGQTTSSFAQTTPAFGQSNLFSTPSTGFGSNLFS
SAPLLNTSSTMGFGQTTPSLSTPFQLTQPSQNSAFGFNNFGQTQGAAASGFGGTPSLFSQ
PPAIQSSVVAQPSVVTNPFGTLPAMPQMSIGRTGTSSSIQYGISSLPVVDKPVPVRISSL
LTSRHISQRRVRLPARKYHPKTEGTKVPFFSDDDETPSTPKADALFVPRENPRALVIRPL
DQWPSRGGVEKVSPSKHMSIPVHENGKTAEVVCAPVNEASAKDKNKDLVENGLDKEGFDS
TKLNQKPNGLHEGQHLRKGGGSSITLTGHRAGEAAIVYEHGADIEALMPKLCHSDYYTEP
RIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFIGETDVRRLDLESLIQFNNREVIVYM
DESKKPPVGQGLNKPAEVTLLNIKCFDKKTGQQYTEGPRIEKYKEMLKRKAGDQGAEFVS
YDPVKGEWKFRVQHFSKYWLHEDNEDEYTKYSDA
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggtccacgaatgctttcgggcagtcatcttctagcccatttgggtcacaatca
ggtttcgggcagacaagtaataacccatttgctccaaaaccttttggcagtacaaatcca
tttggttctcaatcaggtggttccttttttggtagcacttccactggagtgtttggaacc
ccccaatcttcttcacctctggggtctacatcagtttttggtgcatcatcctcacctgca
tttggagcttctactactacttttggcagttcatcaccagcatttgggagttcatcagta
ttcgggcaaaagccagcttttggcggctttggttcaagcagtgctcaaacaagtccattc
ggcagctcgtttcaacaatcacagccggcatttgggagtggtctattcggctcatctaca
ccttttggtacttcaagtcaacctgcatttggtactccgagtactccaacatttggttca
tcaacaacccctgcttttggtgccccgacgagtacaccagcttttggtacatcaagtact
ccagcctttggttctacatctaatccaaccttcggcagtacaagcagcccatttggtgtg
acaaatcctcctgtttttggatctggcactccgtcctttggtactaccactgcttctgcc
tttggttccacatcaactcctgcttttggtactccgagtgctccttcgtttagttttgga
tcctctcctgcatttggccaatcaacatctgcttttggcagtagcccgtttggcacaaca
acgtcagcttttggtgctcaaagttctgcctttggagcccaaacttctgcatcatctttc
ggaaaccctagttttggacaatctgccgttggtggtcaacggggcggaacacgagttgct
gcttaccaggcaacacctgatgcagataattccagtggtacccagcctgcgaaactagag
tctatttcggccatgccagtttacaaagaaaagagccatgaagaacttaggtgggaggat
taccagttgggagacaagggaggtcctgctcctgcgggtcagtcaactggtggaatcaat
tttggaagctcagccttcgcatcatcatcaacttccccttttggccaatcatctgcaaat
ccatttacgtcctctacatcttccaacccttttgcccccaaaccatccacattcagtact
ccaaattttggagtcccaactactccggcttttaatacctctgcctttccaagctcaaat
acatctaatccttttggctctacatcctccacttcaccttccttatttggatcaacttca
gcttttggacaaagtacatctccgaccctctttggatcggctagtgcttcgggttttgga
tcatcaacatcaatttttggctcctcgtctgctcagactactgcctcagcatttggtcct
agcttaagctttggtaacacccaatcatcaccgttattccaatcaactaccccttcattc
ggacagacgaactcggcctttggacagaccacatcatcttttgcccagactacaccagct
tttggtcaatccaatttgtttagtacaccttctactggctttggtagtaatctgttttca
agtgcaccactgctaaatacaagcagtacaatgggatttggccaaacaacaccctctcta
tcaactccttttcaactgactcagccttctcagaattctgcttttgggttcaataacttt
ggtcagacacaaggagctgctgcaagtggttttggtggcactcccagccttttcagtcag
ccgccagctatccaaagctcagttgtcgcacaaccttcagttgttactaatccatttgga
actttaccagcgatgcctcagatgtcaattggtcgcactggcacttcttcttctatacag
tatgggatttctagtttaccggtcgttgacaaacctgttcctgtccggatatcatcatta
ctaacttctcgacacatttctcaaagacgggttaggttgccggcaaggaaatatcatcct
aaaactgaggggactaaggtaccattctttagtgatgatgatgaaacaccaagcacacct
aaggcagatgcattgtttgttcccagagagaacccaagagctttagtaattcgtccattg
gaccagtggccttcgagaggtggtgtggagaaagtatcaccatcaaagcacatgtctatc
ccagtgcatgagaatggtaaaactgctgaagttgtttgtgctccagttaacgaggccagt
gcaaaagataaaaacaaagatctggttgagaatggccttgataaagagggcttcgatagt
accaaactgaaccagaaacctaatggtctccacgaagggcaacatctccgaaaaggagga
gggtcttccattaccctaactggccatcgagctggtgaggcagcaattgtttatgaacac
ggggctgacattgaggctctgatgccaaagctctgccattccgattattacacagaacca
cggattcaggaattggcagccaaagaaagagctgaacctggcttctgtcgccgtgtgaag
gattttgtggttggaagacatgggtacggtagcatcaagttcataggggaaacagatgtt
cgtcgtcttgatcttgagtctcttatccagtttaacaatcgggaggtgatagtctatatg
gatgaaagtaagaagcctcctgtcggccaaggtcttaacaagcctgctgaggttacactt
ctcaacataaaatgtttcgataagaagactggacaacagtatacagagggtcctagaatc
gagaaatataaagaaatgcttaagaggaaggcaggagatcaaggtgctgaattcgtgtca
tatgaccccgtcaaaggagaatggaagttcagggtgcagcatttcagcaaatattggctt
catgaagacaacgaagatgaatataccaaatattctgatgcctag
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