Solanum pennellii: 107017738
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Entry
107017738 CDS
T04130
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107017738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107017738
03041 Spliceosome [BR:
spen03041
]
107017738
03036 Chromosome and associated proteins [BR:
spen03036
]
107017738
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107017738
Spliceosome [BR:
spen03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107017738
Complex B
107017738
Complex C
U2 SnRNP specific factors
107017738
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
107017738
TFTC complex
107017738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
GIT_SHD
Motif
Other DBs
NCBI-GeneID:
107017738
NCBI-ProteinID:
XP_015073468
LinkDB
All DBs
Position
4:complement(3852944..3859400)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQPTGIICAINGSFSGGKVQEIVVARGKVLDLLRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILDYNKEKNCFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITFSICGVDCGFDNPI
FAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAAMHKQKTMFFFLLQ
TEYGDIFKVTLDHDNDRVNELKIKYFDTIPVTSSLCVLKSGFLFASSEFGNHALYQFQAI
GDDPDVEASSSTLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKIVNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMNGGQLSDARSRFLGLRAPKLFSIVVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYESLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKKKMVIMIESDQGAYTAEEREAAKKECFEAAGNGENGNAEQMENGEDEDDSDP
LSDEQYGYPKSESGRWVSCIRVLDPRTMQTTCLLELQDNEAAFSICTVNFHDKEHGALLA
VGTAKGLQFWPKKSFEAAYIHIYKFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGIGS
VLRLYDLGKKRLLRKCENKLFPNSITAIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTVAGADKFGNIYFARLSQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKLEEIVQFHVGDVVSCLQKASLIPGGGECIIYGTVMGSVGAMLPFTSRDDVDFFSHLE
MHLRQEFPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctgcagcaacccaccggaataatctgtgctatcaacggc
agcttttccggcggaaaagtacaagaaatcgtcgtcgctcgtggaaaagttcttgacctc
cttcgtcctgatgataatggtaagcttcaaactctattatctgttgaaattttcggggct
atacgttccttagcacaatttcggttaaccggtgctcaaaaggattacattgtagttggg
tcggattcaggtagaatagtgatattggattataataaagagaagaactgttttgataaa
gtacatcaggagacttttggtaaatcgggttgtaggaggatagttccgggtcagtattta
gctattgacccaaaaggtagggctgtgatgattggtgcttgtgagaagcagaagcttgtg
tatgttttgaatagggatactgcagctaggttaacgatttcgtcgcctttagaagctcat
aagagtcatacgattacgttttcgatatgtggggttgactgtggatttgataacccgata
tttgctgctattgaattggattattcggaggcagatcaggatccgacaggccaagctgca
aatgaggctcaaaagcatttgacattttatgaattggatttaggacttaatcatgtttcg
aggaagtggtctgaacaagtcgataatggtgctaatttacttgtgactgttcctggaggt
ggggatggtcctagtggtgtgcttgtttgtgcggagaattttgtgatatataagaatcag
ggacaccctgatgttagggctgttattcccaggagggtagatttgccagcagaacgtgga
gttttgattgtttcggctgctatgcataagcagaagacaatgtttttctttcttttgcaa
actgaatatggagatatctttaaagtgacattggaccacgacaatgacagggttaacgag
ttaaagataaagtattttgatacgattccagtcacttcttctctgtgtgtgttgaaatca
gggttcctctttgcttcgtcagagtttgggaatcatgcattgtatcagtttcaggctata
ggagatgatccagatgttgaagcttcatcatcaacgttaatggaaactgaagaaggcttt
cagcctgtatttttccagccaagaaagctaaagaatcttgttaggattgatcagattgag
agcttgatgccaatcatggacatgaagatcgtaaatctttttgaggaagaaactccacaa
atattttcactttgtgggaggggtcctcggtcttcgttgcgcatacttcggcctggttta
gctgttagtgaaatggctgtctcccagcttcctggtgttccaagtgctgtctggactgtg
aaaaagaatgttaatgatgagtttgatgcctacattgttgtctcttttgcgaatgcaact
cttgtgctttctattggtgagacagttgaagaagttagtgacagtgggtttcttgatact
actccatctctttctgtttcattgattggtgatgattcgcttatgcaagttcatcccagt
ggaataaggcatattagagaagatggccgtattaatgaatggagaactcctggaaagaga
actattgtcaaggttggatctaatagacttcaagtggtaattgcactaagtggaggggag
cttatatattttgaagttgatatgactggccagttgatggaagttgagaagcatgagatg
tcaggtgatgtagcttgtctggacattgcccctgttcctgagggaagacaaaggtcccgt
ttccttgcagttggatcatatgataacactatccgtatcttgtctttggaccctgatgac
tgtatgcaggttctgagcctgcaaagtgtatcttcaccgccagagtctctcctttttctt
gaagttcaggcctctgttggtggagaggatggtgcagatcaccctgccagcctttttctt
aatgctggtttacaaaatggtgttttattcaggactgtggtggatatgaatggtgggcag
ctttcagatgcacgttcacgtttcttggggcttagagcccctaagctcttctccattgtt
gtgagaggacggcgtgctatgctctgcctatcaagtagaccatggttaggttacatacac
caagggcattttcttttgacacctttatcatatgagagtcttgaattcgcagcctcgttt
tcatctgatcaatgtgcagaaggtgtggtagcggttgcaggggatgcgttgagagtcttc
acgatagagagactgggcgagactttcaatgaaacagctatacccttaaggtatacacca
agaaggtttgttcttcaacccaaaaaaaagatggtgataatgattgagagtgaccaggga
gcatatactgcagaagaacgtgaagctgccaaaaaagagtgctttgaggcagctgggaat
ggtgaaaatggaaatgcagaacaaatggagaatggtgaagatgaggatgatagtgatcca
ctatctgatgagcaatatggttatcctaagtcggagtcaggaagatgggtttcctgcatc
agagtccttgatccaaggacaatgcaaaccacttgtctgctagagcttcaggataatgag
gctgcatttagcatatgcactgttaatttccatgacaaggagcatggagctctgttggct
gttggtactgccaagggcctccagttttggcccaaaaaatcgtttgaagcagcatacatt
catatatacaaatttaaagaggatgggaaggtcctagagcttttgcataagacacaggta
gatggtgtgcctcttgcactatgtcagttccaaggtagactgctggctggtattgggtct
gtccttaggttgtatgatttggggaagaaacggctgctccgaaaatgtgagaacaagtta
ttccccaactcgatcacagctatccacacctatcgtgatcggatttatgttggtgacatg
caagagtcattccactactgtaagtatagacgtgatgaaaatcaactgtacatatttgct
gatgacacggtcccaagatggctaactgcagcacagcatgtagattttgacactgtggca
ggagctgataagtttgggaatatctactttgcgcgattatctcaggacgtttcagatgag
attgaagaagatcccactggtggaaaaataaaatgggagcaggggaagctgaatggagcc
ccaaataagcttgaggaaatagtacaatttcatgttggtgatgtggtctcttgcttgcaa
aaggcgtcacttattccaggagggggcgaatgtataatctacgggactgtgatggggagt
gttggggcaatgcttccatttacctcgagggatgatgttgacttcttctcacatttggag
atgcatttgaggcaggagttcccaccgttatgtggtagggatcacatggcctacagatct
gcctacttccctgttaaggatgtaatagatggagacttgtgtgaacaattcccaaccttg
cccatggatatgcagcgcaaaattgcagatgagttggataggacaccaggcgagattctg
aaaaagcttgaagaaataagaaacaaaattatttga
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integrated database retrieval system
