Solanum pennellii: 107017803
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Entry
107017803 CDS
T04130
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107017803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107017803
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107017803
Spliceosome [BR:
spen03041
]
Complex C
Other components
Step II factors
107017803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
RRM_DEAH11
KH_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
IBR_1
AAA_19
AAA_22
zf-C3HC4_2
zf-RING_UBOX
ResIII
Helicase_RecD
ABC_tran
AAA_29
Arc_MA
SLFN-g3_helicase
AAA_30
Motif
Other DBs
NCBI-GeneID:
107017803
NCBI-ProteinID:
XP_015073558
LinkDB
All DBs
Position
4:4717728..4726087
Genome browser
AA seq
1730 aa
AA seq
DB search
MHDSSSYNRRFPAPAMYHQHSYRPSSNRPCRPGFYSSSYELDRPPGHSHKSPNFVIQLRY
GNRRINRYGLDDLIEKLPFAPRSSFVFSKGFLSGSLLYDQWSETLEVIVKLWRMRLSGSH
SFTPWVKRNVEVPSDEDELKGRVKMVFLEELKGLLVEGELLQKWEKKLELLRDEICELSR
LLKNRNNLRVCNEFLKKREGLEKESDLITKRIEEFKRGIECIIQQLEETSLEEGGSRVFK
IGTEFDWSKIHCLMMRECRRLDDGLPIFAFRQQILRQIHYQQVTVLIGETGSGKSTQLVQ
FLADCGVTGNGSIVCTQPRKLAANSLAQRVKQESEGCYEDNSIICYPSYSSGHKFDSKVV
FMTDHCLLQHYMVDKSLSKISCIIVDEAHERSLDTDLLLALIKNLLLQRLDLRLVIMSAT
ADAAQLADYFFGCGTFHVAGRTFPVDIEYVPCESSGCLGVGPISSYVYDVVKMVTEIHET
EGEGTILAFLTSQIEVEWACVKFQTLSAISLPLHGKLSHEEQHRVFLSYPGKRKVIFTTN
VAETSLTIPGVKYVVDSGMVKESRFEPGTCMSILRICNVSQSSAKQRAGRAGRTGPGRCY
RLYSESDFEGMSHHQEPEIRKVHLGVAVLRILALGIKNVHDFDFVDAPSPKAIEMATRNL
VQLGAVGKKDSAYELTIEGHKIIKLGIEPRLGKLILSCFNQCLSREGVVLAAVMANSSSI
FCRVGSEGDKLKSDCLKVQFCHPNGDLFTLLSVYKEWEAVPKEGKNSWCWDNSINAKSMR
RCQETVQELEACLKSELNIIVASYWHWDPQMHTEHDETLKRIILSSFAENVAMYSGYDQL
GYEVALSGKYIQLHPSCSLLNFDRRPTWVVFGEILSAANEYLVCVTAFEFSSLSALSPSP
LFNFLEMDAQKLEKKVLTGFGSMLLKRFCGKSNSSVNNLVSRIRTKYMDERIGIQVNVGK
NEVLLYASSSNMESVLGQVNGALEYESKLLQNECLEKCLFSGGSAASASVALLGAGAIVK
HLELKKRILAVDIFHSNTKAVDDKELLMFLERNTSGDICAVHKSSGTGHDNEENRWGRVT
FLSPDAAKQAMLLNQVECNGGFLKVVPSRSVFSNDQKQFSSVLRTRVNWPRRCCNGVAIV
KCEPNDVGFMVKDFSVVMIGGNTIRSKPSNKYSDSIVISGLNTDHSETEVLEILSGATDG
KILDFFFVRGSAVENPPVAACEEALRREISPFMPKKAPFVQSIRVQVFQPEPKDTYMRAS
IMFDGSLHLEAAKALEHIDGKVLSGCLPWQKIRCQQQFHSSVSCPAPVYHVIRNQLDSLL
PCLQRRNGVECNLERNENGSFRVKISASATKIVAELRRPLEQLMKGKIVDHVGISPTVVQ
LLFSREGNNIMKMVQQETGTYILFDRHSLSVRIFGSSDKIDIAERKFVNSLLALHESKQL
EVHLRGGLLPLDLMKRVVQSFGPDLSGLKLKVPDAEFSLNTKRHCISVKGTKDMKQKVEE
IISEIAQSGLPSIMMDNETDCPICLCELEDAYRLEGCTHTFCRSCLLEQCESAIRSREGF
PLCCMHKGCGAHILVSDLRSLLSNDKLEELFRASLGAFVAASGGLYRFCPSPDCPSVYHV
TESEEAGAPFICGACYVETCTSCHLEYHPYISCEKYKEFKDNPDFSLEEWAKGKENVKKC
PVCGFTIEKIDGCNHIECKCGKHVCWVCLVFFSSSDDCYNHLRSLHQAIM
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atgcatgattcttcctcctacaatcgccggtttccggctccggcgatgtatcaccagcat
agttatcgtccgtcaagtaacaggccatgtcgtccgggtttttattcttcgagttacgag
cttgatcgaccgccgggacattcgcacaagtcgccgaatttcgtaatccagctgcgttat
ggtaaccggagaatcaaccggtacggattagatgatctaattgagaaattaccgtttgcc
cctcgtagttcgtttgtttttagcaaagggttcctttctgggtcactgttgtatgatcaa
tggagcgaaacgcttgaagtgattgtgaaattgtggagaatgaggctttcaggtagtcat
tcgtttactccatgggttaaacgaaacgttgaggttccatctgatgaggatgaattgaaa
ggtagggtaaaaatggtatttttggaggagttgaaagggttgttagtggagggtgaattg
ttacaaaagtgggagaagaagttggaattgttgcgcgatgaaatttgtgaattgtcgaga
ttactgaagaacaggaataatttgagggtgtgtaatgagtttctgaagaaaagggaaggt
cttgagaaggagagtgatttgataacgaagaggatagaggagtttaaaagaggaattgaa
tgtattattcaacagttggaggagacgagtttagaggagggtggttcaagggtgtttaag
attgggacagagtttgattggagtaaaattcattgtttgatgatgagggagtgtcgcagg
cttgatgatggcttgccaattttcgctttccggcagcagatactgaggcaaatacattat
caacaggtgactgtcttaattggtgagactggatcaggaaaaagtacgcaattggttcaa
ttcctagctgattgtggggtaactggtaatgggtctatagtttgcactcaacctcggaaa
cttgctgcgaattctttggcacaaagggtgaaacaggaaagtgaagggtgttacgaagat
aactcgatcatctgctatccgtcatattcatctggtcataagtttgattcaaaagtagta
tttatgacggatcattgccttctacagcactatatggtcgataagagtttgtccaagatt
tcatgtatcatagttgatgaggcacatgaaagaagcctagacactgatctacttttagca
ttgataaagaatcttctccttcagaggcttgatctgaggcttgttattatgtctgccaca
gctgatgcagctcagcttgcggattacttctttggctgcggaacattccatgtagctggt
agaacttttccggttgatattgaatatgttccctgtgaatccagtggatgtcttggtgtt
ggccctatctcctcctatgtgtatgatgttgtcaagatggtgactgaaatccatgaaact
gagggagagggaacaattctggctttcttgacttctcagattgaagttgagtgggcttgt
gtgaagtttcaaacattgtcagctatttctttacctttacatggcaaactatcccatgaa
gagcagcatagagtttttctcagctatccgggaaagagaaaggtaatattcaccacaaat
gttgctgagacatcattgacaattccaggggttaaatatgttgttgattctggcatggtc
aaagaaagcaggtttgagcctggcacttgcatgagtattctcaggatatgcaatgtcagc
cagagctcagctaagcagcgggctggtcgtgctgggagaactggaccaggaagatgttat
cgactgtactcggaaagtgattttgaaggtatgtctcatcatcaggaacctgaaattcgc
aaggttcatcttggtgttgcagtgctgaggattcttgccttgggcattaagaatgtgcat
gattttgattttgttgatgcacctagccctaaagctattgagatggccaccagaaatctg
gtacagttaggagctgttgggaaaaaagattctgcttatgaattaacaatagaagggcac
aaaataattaagttgggtattgaacctcggttaggcaaattgatcctcagttgttttaat
caatgtttgagtagagaaggtgttgttcttgctgctgttatggctaattccagcagcatc
ttttgtagggttggttctgaaggagacaagctaaaatccgattgcttgaaggtgcaattt
tgccatccaaatggtgatctcttcactttactttctgtttacaaggaatgggaggctgtg
cctaaggaaggaaagaattcctggtgttgggataatagcatcaatgccaaatccatgaga
agatgccaggagactgtgcaagaactggaagcatgccttaagagcgaacttaatatcatt
gttgcaagctactggcattgggatcctcagatgcataccgagcatgatgaaactttgaaa
agaataatactttcttcatttgcagagaatgttgctatgtattctggatatgatcaacta
ggttatgaggttgcactcagtggaaagtacatccaactacatccgtcctgttcgctgtta
aattttgatcgacgaccaacctgggtagtgttcggtgaaatcctttctgcagctaatgag
tatttggtctgtgttactgcatttgagtttagttctctttctgctcttagtccttccccg
ttgtttaattttctggagatggatgcccaaaagctggaaaagaaagttttgacaggtttt
gggagcatgctattgaaaagattctgtggaaaatctaacagtagtgtcaataaccttgtt
tcacgcattagaactaagtatatggatgaaaggatcggcattcaagttaatgttggtaag
aatgaggttctgttatatgcttcatccagtaatatggagagtgttttaggtcaagtgaat
ggtgcactagaatatgaaagcaagttgttgcagaatgaatgcttggaaaaatgcctattt
agtggtggatcggctgcatcggcctcagttgccctccttggagctggtgcaattgttaaa
catttggagcttaagaagagaatcttggctgttgacatatttcattcaaatacaaaagca
gttgatgataaggaactgctgatgtttttggagagaaacacatctggtgatatttgtgca
gtgcacaagtcctcaggtactggccacgacaatgaggagaacagatggggcagggtaaca
tttctttcccctgatgctgctaaacaagctatgttgttgaatcaggtagaatgtaatggt
ggctttctaaaagttgttccttcgaggagtgtatttagtaatgatcaaaagcaattctcc
tctgtcctcagaactagagtaaattggcctcgtagatgctgtaatggtgtagctattgta
aaatgtgagccaaatgatgttggttttatggtaaaagatttctctgtcgtaatgataggt
ggaaacaccatccgttcaaagccaagcaataagtactctgacagcatagtaatatcagga
cttaatacggatcattctgagacagaggtactcgagattttgagtggagctacagatggg
aaaattctggattttttctttgtgagaggaagtgctgtggaaaatcctccagttgcagct
tgtgaagaagcacttaggagagaaatctcccccttcatgcctaaaaaagcaccttttgtt
cagtctattcgtgttcaggtcttccaaccagaaccaaaggatacttacatgcgagcgtct
atcatgtttgatggaagtcttcatcttgaagcagctaaggctttggagcatattgatggc
aaggttttatctggatgtcttccctggcagaagataagatgtcagcaacagttccacagc
tctgtttcctgtcctgcacctgtttaccatgttattaggaaccagctggattctctactc
ccatgcctccagcgaagaaatggtgtggagtgcaatctggagagaaatgagaatggttct
tttagggttaaaatatctgcaagtgctacaaagattgtggcagaactgagaaggccattg
gagcaactgatgaaaggcaagattgtggatcatgtgggaatttctccaactgttgttcaa
cttctattttctagggaagggaataatatcatgaagatggttcagcaagaaacaggaacc
tatattctttttgacaggcatagcctttctgtgagaatctttggttcctccgacaagatt
gatatagctgagcggaagtttgttaactcccttctggcactacatgaaagcaagcaactt
gaagtgcatcttcgtggaggacttttgcctcttgacctgatgaaaagagttgttcagagt
tttggaccagatcttagtggtctcaaactaaaggtgcccgatgcagaattctctctgaac
accaagcgtcattgcatctctgtcaaaggtaccaaagacatgaagcaaaaagttgaggag
ataatttccgaaattgctcaaagtggtcttccaagtataatgatggacaatgagactgac
tgccccatttgcttgtgtgaactggaggatgcttacagacttgaaggttgtacccacacc
ttctgtcggtcgtgcttgctggagcagtgcgagtctgcaatcagaagccgggaaggtttc
cctctatgctgtatgcataaaggttgtggggcacatattctggtttctgatttgaggtct
ttgctgtcaaatgataagttggaggaacttttcagggcttctttaggggcctttgtagca
gcaagtgggggtctctaccggttttgcccctcccctgactgcccttcagtttatcatgtt
actgaatcagaagaagctggtgcaccttttatctgtggcgcatgctatgtggagacgtgt
acgagttgccacctggagtatcacccctacatctcatgcgagaagtacaaggagttcaag
gacaacccggatttctccctagaggaatgggccaaggggaaagagaatgtgaagaaatgt
cctgtttgcgggttcacgatagagaagatagatggctgcaatcatatcgagtgcaagtgt
ggaaaacatgtttgctgggtttgtttggtattcttcagcagcagcgacgattgctataac
catctgaggtctcttcaccaggccattatgtga
DBGET
integrated database retrieval system
