Solanum pennellii: 107017817
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Entry
107017817 CDS
T04130
Name
(RefSeq) uncharacterized protein LOC107017817
KO
K06100
symplekin
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107017817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107017817
03019 Messenger RNA biogenesis [BR:
spen03019
]
107017817
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107017817
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107017817
U7-dependent histone pre-mRNA processing factors
107017817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
LamB_YcsF
B12-binding_2
Motif
Other DBs
NCBI-GeneID:
107017817
NCBI-ProteinID:
XP_015073575
UniProt:
A0ABM1GN91
LinkDB
All DBs
Position
4:72252867..72283334
Genome browser
AA seq
1331 aa
AA seq
DB search
MAGPIREQALPLLASANNHGDLAVKLSSLKQLKDVLLSAEPSQVAELLSYLIDLQSSPES
LLRKGLIEVIEAVGMKAKEHLLVLMPVLFACLKDMNSMVAKQSVISGMKIFCGVLEELSS
QFHRHGIVERWLEELWTWMVKFKDTVFGIIFEAVPIGTKLLASKFLETYILLFTSSDSEK
SGAQAKHGWTFNISWVVGHHPVLDPASLASDAKNKVGILLDLLHSASSLPGLLTISVINS
LAVIARRRPIHYNRILSALLDFDPNFEMTKGGHAASIQYSLRTAFLGFLRCTHPSILESR
ERLMKSLRAMNAGDAADQVLRQLDKMIRNNERASRDSRLNKDEQLSNHLPISGDPTKKRS
TPLDNEDPSNNYDLTTKRVYYGPNNHSHTAPVERNDSGKEYVNGVDPTVAQIINMIGALL
AEGERGANSLDLLISELHPDVLADIVITNMKHLPKNNPPPFAPVGTFSLPRASDSTNLSQ
IMAPIDSSLGQQSWVPVSQTPISLSTATCSTFPEMPTSASLPLDSKRDPRRDPRRLDPRR
TAVAVEVSPPFVAEHNTSAMQSAILQSDINPSSSSNIDIAVPLMSSSECMPMTYLKMETN
SITGESSPGPVVGLLAPKEEGHEEDLNEAIPDRKSDPTIHVPLLSPGKVEPELVPEIPSE
VGVTNEIYSPLLETDQLSPPISTAATPEDACEDLPALPPFIELTDEQQRNMGTLAVEQII
DSYKKLKETDSKHTGMALLSRLVAQIGADADAHVVLMIQRHIFSGNQHEKVHELAMHVLY
HLHYLMLLGSAENISSAAALYEKLLLSAAKSLLDSLPANDKSFSRLLGEVPYLPESVMRL
LVDLCSDNYLGNDGRDGDRVTQGLGAVWSLILGRPPNRQACMDIALKCAIHPQDEVRAKA
IRLVSNKLYVVGDISDNIEQYAKNMFLSAVNQHVTDAEYSQSGTLVQRTGETGNQEASVS
GSQISGPGFFENDFVKTAATDSQSDSELSLAQAQRLISLFFALCTKKFSLLHLVFDTYAR
APKAVKQAVHRHMPVLIRAIGSSCSELLHIISDPPQGCENLLTQVLHILSEGTTPPPDLV
AVVKRLYETKLKDATILIPVLSSYSKSEVLPIFPNLVALPLDKFQLALARILQGSAHTGP
ALTPAEVLVAIHDINPDRDGLPLKKITDACSACFEQRTVFTQQVLAKALRQMVDQTPLPL
LFMRTVIQAIDAFPTLVDFVMEILSKLVVRQVWRMPKLWVGFLKCVSQTQPHSFPVLLQL
PPAQLESALNKYVNLRSPLLTFANQPNIKTSLPRSTLVQLGLFNESLQQSHLSSTVHASE
TSASVHGTTLT
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atggctggaccaattcgggagcaagctctaccgctactcgcgtccgctaacaaccacggt
gatttggcagtaaaactatcttcgttgaagcaattgaaagatgtattgttatcggcagag
ccatctcaagttgctgagcttctctcttatttaattgaccttcagtcttcacctgaaagt
ctcttacgcaaaggcctcattgaggtaattgaggcggttgggatgaaagcaaaggaacat
ttgttggtattaatgcccgtattatttgcatgcttaaaagatatgaattctatggtggca
aagcaatcagttatatctggcatgaaaatcttttgtggtgtattggaggaattatcatct
cagtttcaccggcacggtatagttgaaaggtggcttgaagagctctggacttggatggtc
aaattcaaggatactgtctttggaatcatttttgaggcagtccctattggtacaaaattg
ctggcgtcgaagttccttgaaacatatattctacttttcacatcaagtgattcagaaaaa
tctggagctcaagctaaacatggatggacttttaatatttcatgggtagttggtcatcac
cctgttcttgatccagcttcacttgcatcggatgcaaaaaataaagttggcattctattg
gatttattgcactcagctagttctctccctggtttactaaccatatccgtcattaatagt
ttggcagttatagcaaggaggcgacctatccattataaccgcattttatcagcattgctt
gattttgatccaaactttgagatgacaaagggtggacatgctgccagcattcagtattct
ctgagaacggcctttctaggattcctgaggtgtacacatccttccattttggagtcaaga
gaaagattgatgaaatctttgcgagcaatgaatgctggtgatgctgctgatcaagttctt
cggcaactcgataaaatgatcagaaacaatgagcgagcttcacgtgattctagattgaat
aaagatgagcagttatcaaatcacttgcccatttcaggtgatccaaccaagaagaggtcg
actccgttagataatgaagatccatctaataattatgatctaactacaaaaagggtttat
tatggtccaaataatcacagtcacacagctccagttgagagaaatgattctgggaaagaa
tatgtcaacggggtggacccaacggttgcacaaataattaacatgattggtgctcttcta
gcagaaggagaaaggggtgccaactctcttgatctcctaatatccgagcttcatcctgat
gtattggctgatatagtcataactaatatgaagcacttgcctaaaaacaatccccctcct
tttgcaccggttggaaccttttcattacctcgggcgagtgattctactaatctatcccaa
attatggcaccaattgattcctcattaggccaacagtcttgggttcctgtatcccagaca
cccatctctttatcaactgccacatgcagtacatttccagaaatgcctacttctgcaagt
ctccctttagattcaaaacgtgatcccagaagggatccacggcgccttgacccaaggcga
acagctgtcgctgttgaagtatcaccaccgtttgttgcagaacataatacaagtgctatg
caatctgcaattctgcaatctgacataaatccttccagttcatctaatattgatattgca
gtacccttgatgtcaagttctgaatgtatgccaatgacttatctgaagatggaaactaac
tctatcactggtgaaagttcaccaggaccagtagtcggtttgttagctcccaaagaggaa
ggtcatgaggaagacctgaatgaagctattcctgatcgcaagtcggatcccacaatacat
gttccactattatctcctggcaaagtagaaccggaattggtgccagaaattccatctgaa
gttggagtaactaatgaaatttactctcctttgttagaaacagatcaactttctccccct
atatcaactgctgcaactcctgaagatgcatgtgaggacttgcctgcacttccgccattc
atcgaactgactgatgagcagcaaagaaatatgggaaccctggctgttgaacagataatt
gactcatataaaaaattaaaagagacagacagtaagcatacaggaatggcattactttct
cggttggttgcccagattggtgctgatgctgatgctcatgtagttctgatgatccaaagg
catattttctcaggcaaccaacatgagaaggtacatgagcttgcaatgcatgtgctttat
catttgcattatctcatgctattgggttcggctgaaaatatttcatctgctgctgctcta
tatgagaaactcctcctcagtgcggcaaaatcgttgctggattctttaccagcaaacgac
aagtcatttagtaggctccttggtgaagttccatatctgcctgaatctgtgatgagactg
ctagttgatttatgctctgacaattatcttgggaacgatggtcgtgatggtgaccgtgtt
actcagggccttggtgcagtttggagtttaatcttgggtcgcccccctaatcgtcaagca
tgcatggatatagctttgaagtgtgctattcaccctcaggacgaggtccgagcaaaagct
attcgcctggtgtcaaacaaactttacgtggttggtgacatttcagataatatcgagcag
tatgctaagaatatgttcttgtcagctgtaaaccagcatgtcacagatgcagaatattcc
cagtctggaactttggttcagaggacaggagagacaggaaatcaggaagcctcagttagt
ggttctcagatttcagggccaggattctttgaaaatgattttgttaagactgcagcaact
gattctcaaagtgattcagagttgtctttagctcaagctcagcggcttatctcgttattt
tttgctctatgcactaagaaattcagtcttctccaccttgtatttgatacttatgcacgt
gctcctaaggcagttaagcaggctgttcaccgtcatatgcctgttcttattagggctata
ggctcttcatgttcggaactgcttcatataatatctgatccacctcaaggctgtgaaaat
cttttgacacaggtgcttcatattctctctgaagggacaacccctccgcctgacttagtt
gcagttgtcaagcggttatatgaaactaaactgaaggatgcaactattcttattccagtg
ctctcttcatattctaagagtgaggttctacctattttcccaaatcttgttgctctccca
ctggataagtttcagcttgccctggctcggatattacagggttccgcccatactggtcca
gcactgaccccagcagaagtgctggtcgctatacatgatataaatcccgacagggatggc
cttccgctaaaaaagataacagatgcttgctcagcttgtttcgaacagcgtactgttttc
acgcaacaggtcctggcgaaagccttgagacagatggttgatcagactcctctcccgctg
ctcttcatgagaacagtgattcaggccattgacgcgtttcctactctggttgattttgtg
atggagatactctccaaacttgtggttagacaggtatggaggatgccaaaattgtgggtg
ggattcctaaaatgtgtctcacaaacacaaccacattcttttcctgtactactacagttg
ccaccagcgcagcttgagagtgctctaaacaaatatgttaatctccgaagtccattgctt
acctttgctaatcagccaaatattaaaacttcactccctagatcaaccttggtacaactt
ggtctttttaatgagagtttgcagcaatcacatctctcatctactgtgcatgcctcagag
acaagtgcttctgttcatggaacaactctaacatga
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