Solanum pennellii: 107017856
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Entry
107017856 CDS
T04130
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107017856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107017856
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107017856
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
PRP4
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WD_LRWD1
Beta-prop_SCAP
eIF2A
Beta-prop_IFT140_1st
Beta-prop_SPT8
Nbas_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
107017856
NCBI-ProteinID:
XP_015073621
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Position
4:7537690..7542155
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AA seq
580 aa
AA seq
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MDAMDAEDEVPVSTSETSTLVDDNSTVVNAIGAVNLQPVPAVIPPVVPTVILPPVVPAIA
PRLAVPTPIPPPLAPLPVRPPVLRPPVAQNGEMQENDSDSDLEEMVSGRGAAGSTQEYEI
SEESRIVRERQEKALQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDR
LRMLMARLDAEGQLEKLMKAHEDEEAAASAAPAEEEDIQYPFYTEGSKALLDARVEIAKY
SLVKSALRLHRAKRKRDDPDEDVDAEVDWALKQAGSLALDCSEIGDDRPLFGCSLSHDGK
MLATCSLSGIAKIWSMPLVQKVSTLKGHTERATDVVFSPTSNYLATASADKTARLWNSEG
SLLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWNVESGEELLLQEGHSRSVYGLSF
HHDGSLVASCGLDALVRVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRI
WDLRQRRSSYIIPAHSNLISQVKFEPQEGYFLATASYDMTAKVWSSRDFKPVKTLSGHEA
KIMSLDVASDGQFITTVSYDRTIKLWSSKNIEKEEKMDMD
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggatgctatggatgctgaggatgaagttcctgtttcaacttcagaaacttcaactcta
gttgatgataattcaactgtggttaatgctataggtgcagttaatcttcaaccagttcca
gctgtcattccaccagttgttccgacggttatccttcctcctgtcgtgcctgcaattgct
ccaaggcttgcagttcctacccctattcctcccccattagctccgttgcctgttcgtcca
cctgtccttaggcctccggtagcacagaatggagaaatgcaagagaatgattcagattca
gaccttgaagaaatggtatccggtcgtggtgctgcgggctccacgcaagaatatgagatc
tctgaggagagtagaattgtccgagagaggcaggagaaggccctgcaggagcttctcatg
aagagacgtgctgctgcgcttgcagttcccacaaatgatatggccgttcgagctcgactg
cgaaggcttggtgaacccataactctctttggagaaagggagatggaaagaagggatcga
ctgcggatgcttatggcaaggcttgatgcagaagggcagctggaaaagctgatgaaagct
catgaggatgaagaagctgcagcttctgctgcaccagcagaggaggaggatattcaatac
cctttttacacagaaggatcaaaagcacttttagatgctagggtagaaatcgcgaaatat
tctttagttaagtcagctttacgtctccatcgcgcaaagaggaaaagggatgatccagat
gaagatgtggatgcagaggttgattgggctttaaagcaagcagggagcctggcccttgat
tgcagtgaaattggagacgatagacccctttttggatgctcgctttcacatgatggaaag
atgcttgcgacctgttctctgagtggaatagcaaagatatggagtatgcctctagtgcaa
aaggtttccactctaaaaggtcacactgaacgagctactgatgttgtgttctctccgaca
agcaattatttagctactgcatctgctgacaagaccgcaaggttatggaactcagaaggt
tctctcctcagaacttttgaggggcatttggaccgtctagctcggattgcttttcatcct
tctggaaaatacttgggcacagctagcttcgacaaaacttggagattatggaatgtggag
agtggtgaagagctgcttttgcaagaaggtcacagtaggagtgtttatggattgtctttt
caccatgatggttcattagtggcatcatgcgggttggatgcacttgttcgagtgtgggat
ttaaggactgggcgaagtattcttgctctagaaggccacgtaaaaccggttcttggtgtc
agtttttcaccgaatggttatcatttggctagtggtggtgaagataatacctgtcgtatt
tgggacttgcggcagagaagatcttcttacatcataccagctcactccaatcttatctct
caagttaagtttgagcctcaggagggatactttttggctacagcttcgtatgatatgact
gctaaggtatggtcatcaagagatttcaaacctgtaaaaacactttctggtcatgaagca
aaaatcatgtcattggatgttgcatcagatggacaattcattacaaccgtgtcttatgat
cgaacaatcaagctatggtcaagcaaaaacattgagaaggaagagaaaatggatatggac
tag
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integrated database retrieval system
