Solanum pennellii: 107017879
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Entry
107017879 CDS
T04130
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spen03000
]
107017879
03036 Chromosome and associated proteins [BR:
spen03036
]
107017879
Transcription factors [BR:
spen03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
107017879
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107017879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
107017879
NCBI-ProteinID:
XP_015073644
LinkDB
All DBs
Position
4:complement(54838188..54883841)
Genome browser
AA seq
1488 aa
AA seq
DB search
MEDEEEKHIEMEEEDVEKASSDPSDDSFINDDDSDDPIMDDDDDDNQQSLPEEPLTDKEI
EELIAELLETESKAAEAQEALEEESVSKVEADVREELSQTLKGDELENAVADEMATFKEE
WETVLDELETESAHLLEQLDGAGIELPSLYKWIESQAPHGCCTEAWKNRTQWVGSELTSD
LTGAIADAEKYLQIHRPVRRKHGKVLEEGASGFLAKKLAGNDGSEAQGGSSGVDWGSFSK
LCSDNSSSSMGTTSFGSKDWSSVYLASTPQQAAELGLKFPGVDEVEEIDDIEDSSGDPFV
ADAIANERELNLSEEQKRKFKKVKEEDDLKTDLKLRRCLKQRRHKNRQKLEEIQEDTTDV
TTGYLSQDFGFDKKEYSTVDDGDAPKSNEVTSVIDATVSKHEIDAEAKGLKLLHNFEEME
PQSKKARIIIPDSDEEDLPGKMLSPTCSLSETEDQSNAQRDGDNVLPVSSLPVCNEKQNF
RCTACDKVAIEVHAHPLLRVVLCLDCKTSMKTKMQDVDCSECYCRWCGRCSDLLSCKSCK
RLFCSVCIRRNLGEEILSGIKTSGWQCCCCSPSILLPLVSVLEKIMESQGLVDSNTDTDS
DNSDADINGHKSTKRRPKKKIRRILDDTELGEETKRKIAIEKERQERLKSLGAKFSSKTM
FMDSGGCSKSSYETGSLEMLGDIQTGYIVNVVREEGEEAVRIPRSISAKLKSHQVAGIRF
MWENIIQSIRKVKAGDKGLGCILAHTMGLGKTFQVISFLYAAMRSVDLGLRTALIVTPVS
VLHNWRQEFIKWEPSEMKPLRVFMLEEVPRERRAELLQKWRVKGGVFLIGYTAFRNLTLG
KNIKERHVAREICQALQDGPDILVCDEAHIIKNTRADVTQALKQVKCQRRIALTGSPLQN
NLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTADDVKIMNQRSHILYEQLKG
FVQRMDMNVVKMDLPPKTVYVMSVKLSPLQRKLYKRFLDVHGFTKDKVSGEKIMKRSFFA
GYQALAQIWNHPGILQLTRENRISSRPEDPVEILLADDCSSDENTYYNVVSGVSAEKTNS
NNEALKKNHNGFLHGDWWSDLLDNNCKEVDYSGKMVLLLDILTMSSNVGDKALVFSQSLS
TLDLIEQYLSKLTRPGKKGKYWKRRKDWYRIDGRTESSERQKLVDCFNSPLNRRVKCVLI
STRAGSLGINLYAANRVIIVDGSWNPTHDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKI
YKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDESCDIPLELKQVREHAGEANTN
INVGSVQKQKLTFPNGSSSSDKLMQSLIDRHHPRWIANYHEHESLLQENEDEKLSKEEQE
MAWEVYRRSIEWEERRVSPDEPVEQQHISTTESLSKQKPFVPRATVFPPADRNLVFAVGS
SRCRLVHRKCTKLSHLLTLRSQGTKWGCSTVCGECAQEIKWEGVRSAK
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgaagaagaaaaacacattgaaatggaagaagaagatgtagaaaaggcttct
tctgatccttctgatgattcgtttatcaacgatgatgattcagatgatcctataatggat
gacgatgatgatgacaatcaacaatcgcttcctgaggaacccttaactgataaggaaatt
gaagagctcattgctgagcttttagaaactgagagtaaggctgcagaggctcaagaggct
ttagaagaagagtcagtctctaaagtggaggctgatgttagagaagagttgtcacaaact
cttaaaggagatgagttggaaaatgctgtagctgatgaaatggcaaccttcaaagaggag
tgggaaactgttctcgatgaactggagactgaaagtgctcatttattggaacaactggat
ggtgctggaattgaactccctagtctctataagtggatagagagtcaggctcctcacggt
tgctgcactgaagcatggaaaaataggactcagtgggttggttctgagctgacaagcgac
ctcactggagcaattgctgatgctgagaagtatcttcaaatccacagacctgtaagaagg
aaacatggaaaagtcttggaggagggtgccagtggtttcttggcaaaaaaacttgctggg
aatgatggcagtgaggctcagggagggagcagtggtgtagattggggctcttttagcaaa
ttatgctctgataactcttcatcatctatgggtactacttcatttggcagcaaagattgg
tcctctgtttacctcgctagtacaccacagcaagctgctgagctaggactaaaatttcct
ggagtggatgaggttgaggagattgatgatattgaagacagttctggtgatccatttgtt
gcggatgccattgcaaatgaaagagagttaaatctttctgaagagcagaagaggaagttt
aagaaggttaaagaggaagatgatctaaaaactgatctgaagcttaggagatgtttgaaa
cagagaagacacaagaacagacagaaattggaggagatacaggaagatacaacagatgtc
actactggttatttatctcaagattttggctttgacaagaaagagtattccaccgttgat
gatggggatgcgccaaaaagcaatgaagttacatcggttattgatgccacagtttcaaaa
catgaaattgatgctgaggccaaaggattgaaacttttacacaacttcgaagagatggag
cctcaaagtaaaaaggctcggatcattataccagatagtgatgaggaggatcttcctggg
aaaatgttgtctcctacatgtagtttgagcgagacagaagatcaatcaaatgcacaaaga
gatggagataatgtgcttccagttagttcccttcctgtatgcaatgagaagcaaaatttt
cgctgcactgcttgtgataaagtggctattgaagtccatgcacatcctcttttgagagtt
gtcctttgcctggactgcaaaacttcaatgaaaacaaagatgcaggatgttgattgctca
gagtgctactgcagatggtgtgggcgttgcagcgatctgttaagctgtaaatcatgcaaa
aggttattttgtagtgtgtgtataaggaggaaccttggtgaagaaattttatcaggaatt
aaaacatctgggtggcaatgctgctgttgctccccaagtatcctgcttccgttggtttca
gtgttggagaagatcatggagtctcaaggtttggtagattcaaatacagacacggattca
gataactcagatgctgatatcaacgggcataaaagcaccaagagaaggcctaaaaagaaa
attagaagaatcctggatgatactgagttaggggaggagacaaaaaggaagattgcaatt
gaaaaggaacgccaagaacgcctcaaatctctgggagcaaaattttcaagcaagactatg
ttcatggattctgggggttgtagcaaaagctcgtatgaaactggtagcttggaaatgctt
ggtgatattcaaactggttacatagttaatgtggtgagggaggaaggggaagaggctgtc
aggattccacgcagtatctccgcaaaactaaaatctcaccaggttgctgggattcgattt
atgtgggaaaatattattcaatctatcaggaaagtcaaggctggggataaaggtcttggt
tgcatcctagctcatactatgggtctaggtaaaacgtttcaggtgatttctttcttgtat
gctgctatgaggagtgtggatttaggattgagaactgctctcatagtcacgcctgtaagt
gttctgcataactggcggcaggaatttataaaatgggaaccatcagaaatgaagcctctc
cgtgtctttatgcttgaagaagttccaagggagagaagggccgagctactccaaaaatgg
agagtaaaaggtggcgttttcttaattggctacactgctttcagaaatttgacactaggg
aagaatataaaggagcgtcacgtggccagagaaatttgtcaggctcttcaggacggacct
gacattcttgtttgtgatgaggctcatattatcaagaataccagagctgatgttactcaa
gccttgaaacaagtcaagtgccagagaaggattgcattaactggatctcctcttcaaaac
aatttgatggagtactattgtatggttgattttgtgagggaaggatttcttggcagcagt
catgaatttagaaaccgctttcagaatccgatagaaaatggtcaacacaccaattctaca
gctgatgatgttaagattatgaatcagcgatctcatattctctatgaacagttaaaagga
tttgttcaaagaatggacatgaatgtcgtgaaaatggatttgccaccaaaaactgtctac
gtgatgtctgtaaagctttctcctttacagagaaaattgtataaaagatttctagatgtt
catggcttcaccaaggacaaggtttctggtgagaagataatgaagagatcattttttgct
gggtaccaagccttggctcagatatggaaccatcctgggattttgcaattgacgcgagaa
aacagaatctctagtcgtcctgaagatcctgttgagatccttcttgcagatgattgctca
agtgatgagaacacatattataatgtggtttctggagtttctgcagagaagacgaatagc
aacaatgaagctctcaaaaaaaatcataatggcttcctccatggggattggtggagtgat
cttctagataataattgcaaagaagttgattatagtggcaaaatggttttgctactcgac
atcctgacaatgagctctaatgttggtgacaaagcactcgtgtttagtcagagcttgtca
accctagatctcattgaacaatacctttcaaaactaacgcgcccagggaaaaaggggaag
tactggaaacggcggaaagactggtacaggattgatggaagaacagaatcatctgaaagg
cagaaacttgttgactgttttaacagtccattgaatagaagggttaagtgcgtactgata
tctactagagctggatctcttggtatcaatctttatgctgccaaccgtgtaattatagtt
gatggctcttggaatccaactcatgatcttcaagctatataccgagcttggaggtatggt
caaacgaaacctgtttttgcttaccgtttgctggcacatggaacgatggaggaaaagata
tacaagcgccaggtaacaaaggaaggtcttgcagcacgggtggttgataggcaacaagta
catagaactatatctaaagaggaaatgttgcacctttttgaattcggagatgacgaaagc
tgtgatatacctctggaattgaagcaagttagagaacatgctggtgaagcaaacacaaat
ataaatgttggaagtgttcagaaacaaaaattaacctttccaaatggaagttcttcttct
gacaagctaatgcaaagtttgattgacaggcatcatccgcggtggattgcgaattatcat
gaacatgaaagtctcctgcaagagaatgaagatgaaaagctatcaaaagaagagcaggaa
atggcgtgggaagtgtatcggagatctattgaatgggaagagaggcgagtttcgcctgat
gaacctgttgaacagcagcatatctctaccactgaatcattgtcaaagcaaaagccattt
gttcccagggccaccgtttttccgccagcggaccgtaatcttgtatttgcagtggggagt
tctagatgccgtttggtgcataggaagtgcacaaagctatcacatttgcttactcttaga
agtcaaggcacaaagtggggttgcagcaccgtttgcggggagtgtgctcaagagatcaag
tgggagggtgttagatcagcaaagtga
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