KEGG   Solanum pennellii: 107017979
Entry
107017979         CDS       T04130                                 
Name
(RefSeq) UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
spen  Solanum pennellii
Pathway
spen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107017979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107017979
   03041 Spliceosome [BR:spen03041]
    107017979
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     107017979
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107017979
Spliceosome [BR:spen03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    107017979
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 RRM_occluded Nup35_RRM_2 PHM7_cyt Cut8
Other DBs
NCBI-GeneID: 107017979
NCBI-ProteinID: XP_015073783
UniProt: A0ABM1GNS4
LinkDB
Position
4:complement(4158169..4163016)
AA seq 470 aa
MAANNEVKKRKLGKKAADSIATPSKINKNQQPKTPKSDFSNPPNSNSGSDADSLPLKIQK
LLEPYSKDQLVTLAVDTAAVLPAFYRLIQSHADKDISHRKIFVYGLPRDTTRPVLLAVFE
PYGEIEECNVVMDHATGNAKGYAFVLFKTRKSAAKALKEPQKMINNRLASCKLASMKETA
VSGTNEIGNRKIYVSNVPKKVNSEKLRSFFAKFGEIEAGPMGFDPSTGKSKGYALFLYKT
VEAAKKCLEKPSKIFEGRQLHCKKAAEGKIGGGAASITTEAVQQPLLAMPPGQGVYAPVA
AGHSMGMLGQNTDVPMMNPFYGGALANPYGAYGNPFAGVGGFGQQMGGGMGMAAGYGGVL
DSVGGGVSGLGAYGGAGSSTGGSTGVLGAYGGVVSSTGGSTGGLGAYGGVGSCTGGSTGG
LGPYGGVGGSTGGSTGGVAPGLLQLYQNNQAGQPSSAKYPGSSGYPPHFR
NT seq 1413 nt   +upstreamnt  +downstreamnt
atggctgctaacaatgaggtgaaaaagcgaaagcttggcaagaaggcagcagattccatt
gctacgccctctaaaatcaacaaaaatcagcagccaaaaacacccaaatcagatttttct
aacccacccaattccaattccggttccgacgccgactcgttaccgctgaaaatccagaag
cttctcgaaccttactcaaaggatcaactggttaccctagctgtggataccgcagctgtt
ctccctgctttttacaggcttatccagtcacatgctgataaagacatcagccacaggaaa
atcttcgtttatgggttgccgcgtgataccacgcgcccggtgctgctggccgtctttgaa
ccgtacggggagattgaggaatgcaacgttgtgatggatcatgctactggaaatgctaaa
gggtatgcttttgttctgttcaagactaggaaatcagctgcaaaagcgctgaaagagcct
cagaagatgatcaacaatcgtttagcttcgtgtaagttggcttcaatgaaagagactgcg
gtttctgggactaatgaaatcggtaaccggaagatatatgtgagtaacgtgccaaagaaa
gttaattcggagaaattgaggagcttttttgctaagtttggggaaattgaagctggacca
atgggatttgatccatcaactgggaaatcaaaagggtatgctttgtttctgtacaaaact
gtggaggcggcgaagaaatgtctggaaaaaccctcgaagatttttgaggggaggcaattg
cattgtaagaaggcggctgaggggaaaattggtggtggagcggctagtatcaccacggag
gctgtacaacagccgctgcttgcaatgccaccagggcaaggtgtgtatgctccagttgct
gctggtcacagtatggggatgttgggtcagaacacggatgtgccaatgatgaatccgttt
tatggtggagcacttgctaatccttatggagcatatgggaatccatttgcaggagttggt
ggtttcggccagcaaatgggtggtggaatggggatggcagcaggatatggtggggtgtta
gatagtgtaggagggggtgtttcaggtttaggggcatatggtggtgctggtagcagcaca
ggtggttctactggggtgttaggggcatatggcggtgttgttagcagcacaggtggttcc
actgggggtctaggggcatatggtggtgttggtagctgcacaggtggttctactgggggt
ttagggccatatggtggtgttggtggcagcacaggtggttctactgggggagtggctccc
ggcttattgcagctctaccaaaacaaccaggctggccaaccttcgtctgcaaagtatccg
ggaagcagtggctacccgccgcacttcagatga

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