Solanum pennellii: 107018096
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Entry
107018096 CDS
T04130
Name
(RefSeq) uncharacterized protein LOC107018096 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107018096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spen03000
]
107018096
03019 Messenger RNA biogenesis [BR:
spen03019
]
107018096
04121 Ubiquitin system [BR:
spen04121
]
107018096
Enzymes [BR:
spen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107018096
Transcription factors [BR:
spen03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107018096
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107018096
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107018096
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107018096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-TFIIIC
zf-UDP
Rtf2
Motif
Other DBs
NCBI-GeneID:
107018096
NCBI-ProteinID:
XP_015073958
LinkDB
All DBs
Position
4:complement(52204343..52214099)
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AA seq
899 aa
AA seq
DB search
MENVVFFFICMFGIWKFYEFGYQNQSAIEMPIFFDSLTMMSNEEEKRCPLCAEEMDWTDQ
QFKPCKCGYQVCVWCWHHIMDIAEKDVSEGRCPACRTKYEMDKVVAMQANFERAGNTNVN
RKSKPPKAKTKANEVRKDLTNVRVIQRKMAYVTGLPLGIADEDLLQRKEYFGQYGKISKV
SLSRTAGGSIQLFTNDTFSVYITYSKEEEAIQCIQSVHGFVLEGMYLRASFGTAKYCHAW
LRNTVQYMPCNNLSCLYLHSLGADEDSFGKDEVAAIHTRSRVQQIVGASSSAMKRSGNIL
PPPINELSCTSFTSTESSTTQSAGAASDIVNHNSYMARVIPCSDKDENAGDPNRMSAFVD
VGLCNNSGAEKVRNCSEDSGTLDLCSSLSPETINKDNLAQEPYSDTLLFEVPSSNHLVNH
LPRDQNSIEISDEPFREDSISIDSQRLKDLNSINQRAFLMSSHSAKCTGDSGGHSLMHRR
TCSLSNNGTEHRSLHNEVEEASPPLSFVNSTMIDGLHDLEFQSSVKSDTIYRGSSSFSNE
EIVEHLRRTRNDCLNNYDESSAFGPAKNSMNSNILAMNLGSRDDSLTLRHSLIGLCNEPN
GQHDSWKFLHSGQGFSFMKQDGSSGQRADLNSSSSNISLISKQASILHDFREKKEQHMLD
SQYQISRPKGMAPPGFSISSRELPPGFPLSDEIGGFPRTLSGSQLVNSSSSLIHYPSSMR
SFSSAGDSDFIDPAILSSGKGKTTNGFSISGLEIGSQGRALEAEARLWLLMQRKHADQDG
KLSHVHASQTPSAYQDQRFNGEDEHTGTKKFGPRLVDQGQNFDQSLYTHFPLQKFGNGPI
SNGFQHDLLGNFQCRNEVDGMAELQRNERLGFNKYYNGYGNQTVQGSGSGDVFARVFGM
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgttgtatttttcttcatctgcatgttcggaatttggaaattctatgaattt
ggatatcagaatcaatctgcaattgaaatgccgattttttttgactcgttgacaatgatg
agcaatgaagaagagaaaaggtgtcctctttgtgctgaagaaatggactggaccgaccag
caatttaagccttgcaaatgcggttatcaggtgtgtgtttggtgttggcatcacataatg
gacatagcagagaaagatgtgtcagagggacgatgtcctgcatgtcgaactaaatatgaa
atggataaagttgtggcaatgcaagcaaattttgaaagggcagggaacacaaatgtgaac
cggaaaagtaaaccaccaaaggcaaagacaaaagctaatgaagtcaggaaggatcttaca
aatgttcgggtcattcaacgtaaaatggcatatgtgactgggctgcctcttggtattgcg
gatgaagatctgttacaacggaaagaatattttgggcaatatgggaaaatttctaaagtt
tctctatctaggactgccggtggttcaatccagctgtttaccaatgatacttttagtgta
tatattacatattctaaagaggaagaggccatacagtgtattcaatctgtacatggtttt
gtcctggaaggaatgtatttgagagcatcgtttgggactgcaaaatattgtcatgcttgg
ttgagaaacacggtacagtacatgccttgcaataatctttcctgtctatatttgcatagc
cttggtgccgatgaagatagttttggtaaagatgaggtagctgcaattcatacaaggagc
agagttcaacaaattgttggtgcgtctagtagtgcaatgaagcgctcaggaaatatcttg
ccacctccaattaatgaattatcctgtactagctttacttctactgagagttctaccact
caaagtgcaggtgcagccagtgatatagtgaatcacaatagctatatggctcgtgtcatc
ccttgtagtgataaggatgaaaatgctggtgaccccaacagaatgtcagcttttgtagat
gttggactgtgtaataattctggtgcagagaaagttagaaattgcagtgaggacagtgga
actttggatttgtgttctagtttatctcccgaaacaattaacaaagataatcttgctcaa
gagccatattctgatacattgctttttgaagttccatcttctaaccaccttgtcaatcat
ttgccaagggatcaaaattcaatagaaatttcagatgagccattcagggaagactctata
tctattgacagtcaacgattgaaggatttaaatagtattaaccaaagggcgttccttatg
tcctctcattctgctaaatgcacaggggattctggtggccattcgctaatgcacaggagg
acatgtagtctgagtaataatggcacagagcatagatccttacataatgaagtggaagaa
gcttctcctccactttcatttgtaaattcgacaatgattgatggattacatgatttggaa
tttcaaagttctgtcaaatctgatacaatttatagaggttctagctcattctccaatgaa
gaaatagtagagcacctgcgaaggactagaaatgattgtttgaataattatgatgaaagt
tctgcattcggtcctgcgaagaacagtatgaattcgaacattttagctatgaaccttggt
tcacgtgacgattccttgaccttgcgtcacagtttaattggcttgtgtaatgaacctaat
gggcagcatgattcctggaaattcttacacagtggtcaaggattctcatttatgaagcaa
gatggatcttcaggtcaaagggctgatttgaattcttcgtctagtaatatcagtctgata
tctaaacaggcatccatccttcatgacttcagagaaaagaaagagcagcatatgcttgat
tctcagtatcagatctcaagaccaaaaggtatggcaccacctggtttctcaatatcctct
agggagctgcctcctggttttccgttgtctgatgaaattggtggattcccccgtacactc
tctggaagtcaattagtaaatagttcatcaagtttgattcactacccgtcatcaatgaga
agctttagcagtgcaggtgactctgattttattgaccctgccatattaagctctggtaaa
ggcaaaacaacaaatggtttcagtatctcaggtctggaaattgggtcacagggtagagct
ttggaggctgaggcaagactctggcttttgatgcaacgaaaacatgctgatcaagatggg
aaattgtctcatgttcatgcttcacaaactccatctgcatatcaggaccagaggtttaat
ggtgaagatgagcatactggcacgaagaagtttggaccaaggctggtggatcaaggccaa
aactttgaccaatctttgtacacacattttcccctgcagaagtttggtaatggtcccatt
tccaacggctttcagcatgacctgttgggaaatttccaatgtagaaatgaggtggatggt
atggcagaactccagagaaatgagaggttaggtttcaacaaatactataatgggtatgga
aatcaaacagtccaggggtccgggtcaggcgatgtatttgccagggtttttgggatgtaa
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