Solanum pennellii: 107018344
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Entry
107018344 CDS
T04130
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107018344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107018344
03012 Translation factors [BR:
spen03012
]
107018344
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107018344
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107018344
Translation factors [BR:
spen03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107018344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
Dicer_dimer
ATPase
AAA_11
T2SSE
NACHT
PhoH
Motif
Other DBs
NCBI-GeneID:
107018344
NCBI-ProteinID:
XP_015074293
LinkDB
All DBs
Position
4:1303753..1320226
Genome browser
AA seq
1183 aa
AA seq
DB search
MSLYPLQFFTVSSHYRNLRTSSISPPSLTMKDRPLSSCGAVYVPPHQRLRSVITVPSAVS
PQPGSLRPTAIDQKRNPNILKSYPCLPPQQQTVRLQHKRSSQFDEVSEEGGDIELTSYQG
AVTSDNAETWKWKLTALLQNNDIQEVLSREKKDRRDYEQIAALASKMGLYSNLYSKVIVV
SKLPLPNYRFDLDDKRPQREVILPPGLPRRVDVFLGEYLSRKPRSTDVLSRSSSNGSIAT
DEGLFEQSEALPQSKASMKKIHWERSMQMQTEQQTWQESPEGRKMLEFRCSLPAYKEKDA
ILSAISQNQVVIVSGETGCGKTTQIPQFILESEIEYIRGDMCSIICTQPRRISVMAVSER
VAAERGELLGETVGYKVRLEGVKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHE
RGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFDGAPLVHIPGFTYPVHTHFL
ENILEMSGYRLTPDNQIDDYGQERTWKMNKQAPRKRKSQIASAVEDTLRSADFQEFSPET
QESLSCWNPDCIGFNFIEYILCHICENERPGAVLVFMTGWDDISSLKDKLQSHPILGNTS
RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNIAETSITIDDVVFVIDCGKAKETSY
DALNNTPRLLPSWISKVSARQRRGRAGRVQPGDCYHLYPRCVYDAFADYQLPEILRTPLQ
SLCLQIKSLKLGSISEFLKRALQSPELLAVQNAVEYLKIIGALDENENLTVLGRYLTMLP
MEPKLGKMLILGAILNCLDPILTIVAGLSVRDPFLTPLDKKDLADAAKAHFSRDFSDHLA
LVRAYEGWRDAERDLAGYEYCWKNFLSAQSMKAIDSLRKEFYSLLNDTGLVDSNITMYNS
WSYDEHLLRAIICYGLYPGICSVLHNEKSFSLKTMEDGQVLLHSNSVNARDSRIPYPWLV
FNEKIKVNCVFLRDSTAISDSVLLLFGGTISKGEVDGHLKMLGGYLEFFMNPTIAEMYRS
LRRELDELIHTKLLNPRMDVHSYHELLSAIRLLISEDQCGGRFVFSHQILLPSKPCTGAP
TPAPTSRIESGPGGDNAKSQLQTLLNRAGYATPTYKSLQLNNNQFRATVEFNGMQIMGRP
CNNKKQAEKDAAAEALEWLLEGHRAGPDYIEQMSQFLKKSKKA
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagtctatatcctctccaatttttcacagtcagttcacattaccgaaaccttagaact
tccagcatttcaccaccgtcgttaacgatgaaggaccggccgctgtcatcatgcggtgct
gtttacgtccctccacatcaacgcctccgttcagtaatcactgttccctctgctgtttct
ccacaacctggcagcttacgtcctacagcaatcgatcaaaaacgtaatcctaacattctc
aagtcctacccttgccttccgccgcagcagcaaactgtgcgactacaacataagagaagt
tcacaatttgatgaggtttctgaggaagggggtgatattgagcttacgtcatatcagggt
gctgtcacatctgataacgctgaaacatggaaatggaagctcactgctctgctacaaaac
aatgatatacaagaggtgctctcaagggagaaaaaagataggcgtgattatgagcaaata
gcagctttagcaagcaaaatgggtttatatagcaacctatattcaaaagtaattgttgtc
agcaagcttccattacctaactacaggtttgatttggatgataagcgtcctcagagagag
gtgatcctgcctccgggtttacctagacgagttgatgtttttcttggagaatacttgtct
cgtaagccaagaagcacagatgtactttcacgatcaagcagtaatggcagtatagctact
gatgagggtctatttgagcagtcagaggcactccctcaaagtaaggcttccatgaagaaa
atccattgggaaaggagtatgcaaatgcagacagagcagcaaacttggcaggaatcacct
gagggtaggaagatgctggaatttcgttgtagtctacctgcgtataaggaaaaagacgca
atattaagtgccatttcacagaaccaggtggttattgtctctggtgaaactggctgtggg
aagaccacacagattccgcaatttattttagagtctgaaattgagtatattcgtggagac
atgtgtagtatcatatgtacacagccaagaagaatatctgttatggcagtatctgaaaga
gttgctgcggagagaggggagttgttgggtgaaacagttggatataaagttagactagaa
ggtgttaaaggaagggacactcacctcctcttctgtacaactggtatcttgttaagaagg
ctactggttgatagaaatctgaagggaatcacacatgtaattgtggacgagattcatgaa
cgtggaatgaacgaagacttcctgctaatagttctgaaggatttacttccacgccggcca
gaattaaggttgatcttgatgagtgccaccttagatgcagagcttttctcttcatacttt
gatggggctccactagtccacattcctggatttacatatccagttcacactcatttcctg
gaaaatattttggagatgtcggggtacaggttgacgccggacaatcagattgatgattat
gggcaggagagaacgtggaaaatgaacaaacaagctccaagaaaaaggaagagccagatt
gcttctgctgttgaggacaccctcagatctgctgatttccaagaatttagccctgagaca
caagagtccttgtcttgttggaatcctgattgtataggcttcaattttatagaatatatt
ttatgccatatttgtgaaaatgaaaggcccggtgctgttttagtttttatgactggttgg
gatgacataagttctctgaaggataagctacagtctcatcctatcttggggaatacaagc
cgtgttttattgctggcatgccatggttctatggctagttcagagcagaggttaatattt
gacaagcctgaagatggagtgaggaagattgtgttggctacaaatattgctgagaccagt
atcacgattgatgatgtagtgtttgttattgactgtggcaaggcaaaagagacgtcatat
gatgcacttaataatactcctcgtttgcttccttcttggatttcaaaggtttcagctcga
caaagaaggggacgagctggacgtgttcagccaggagattgctatcatctttatcccaga
tgtgtatatgatgcttttgcagattatcaattaccagaaattctgaggactcctttgcaa
tccctttgtttgcaaattaaaagtttaaaactcggtagcatttctgagttcctcaagagg
gctttgcaatctcccgaattgttagcggttcagaatgctgttgagtatctgaaaatcatt
ggggctttagatgagaatgaaaatttgactgttctaggacgttacttaacaatgcttcca
atggagcctaaactcgggaaaatgcttatacttggagcaattttgaattgtttggacccg
atattaactattgttgctggtcttagtgtccgagatcccttcttgacaccacttgacaag
aaagatcttgcagatgctgccaaggctcacttttcacgcgattttagtgaccatcttgct
cttgtccgagcatatgagggttggagggatgctgaaagagacctagctgggtatgagtat
tgctggaagaattttctgtctgcacagtctatgaaagctattgattctcttcgcaaggag
ttctactctttgctgaacgacactggtcttgttgacagcaacattactatgtataattct
tggagttatgatgagcatctccttcgagcgattatctgctatgggttgtatccgggaatc
tgttctgtactgcataatgaaaagtcattttcattgaaaacaatggaagatggtcaggtg
ttattacactcgaactccgttaatgcccgggactccaggataccatatccttggctggtg
ttcaatgaaaagatcaaagtaaactgtgtctttctacgggattcaacagctatctccgac
tcagtgctgcttctatttggaggaaccatctcaaaaggggaagtggacggtcacttgaaa
atgttgggtggatacttagagttctttatgaaccctactatagcagaaatgtacagaagt
ctaagaagagagcttgatgagttaattcacactaaacttctgaatcctaggatggatgta
catagttatcatgaacttctgtcagcaatacggttgcttatctcagaggatcaatgcggt
ggcagattcgtttttagtcatcagattttacttccttctaagccatgtactggagcacca
acaccagctccaacgtcaaggatagaaagtggtccaggaggtgacaacgctaagtctcag
ctacagacgttgctgaatcgagcaggatatgcaacaccaacctacaagtctttgcaactc
aataacaatcagtttcgagcaactgtggagttcaacggaatgcagataatgggaagacct
tgcaacaacaaaaagcaagctgaaaaagatgcagcagctgaggctctggagtggttgttg
gaagggcaccgtgcaggtcctgattacattgagcagatgtctcagtttctgaaaaagagc
aaaaaggcatag
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integrated database retrieval system
