Solanum pennellii: 107018792
Help
Entry
107018792 CDS
T04130
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107018792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spen03032
]
107018792
03400 DNA repair and recombination proteins [BR:
spen03400
]
107018792
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
107018792
DNA replication proteins [BR:
spen03032
]
Eukaryotic type
DNA Topoisomerases
107018792
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
107018792
FA (Fanconi anemia) pathway
107018792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
zf-GRF
zf-C4_Topoisom
zf-CCHC
zf-C2H2_10
zf-CCHC_2
Toprim_4
Motif
Other DBs
NCBI-GeneID:
107018792
NCBI-ProteinID:
XP_015074855
LinkDB
All DBs
Position
5:complement(9565746..9613874)
Genome browser
AA seq
917 aa
AA seq
DB search
MAGGGGRVIRVLNVAEKPSVAKAVSGILSKNQPGGIRVRDGRSRYNKIFEFNYTIRNQPC
QMLFTSVTGHLMEIEFHERYRKWHSCDPLDLYNAPVRKFVPEDKLDIKRTLEAEARSCQW
IILWLDCDREGENIAFEVLDVCRQANHNLTVWRARFSALIDREIHQSVQTLVQPNQLFSD
AVDVRQEIDLRIGASFTRFQTMLLRGAFVLDFATDDRNLVLSYGPCQFPTLGFVVERYWE
IQAHEPEEFWTINCTHNSDEGTATFNWMRGHLFDYTCGVMIYEMCIQEPIATVTKVKQQE
KLKYPPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDCFSDKTDLRT
MVQEQEGHPVWGTYAQRLLDPQSGLWRNPSGGGHDDKAHPPIHPTKFSAGETRWSQDHHR
VYELVVRHFLACVSQPAVGAETIVEIDIAGESFSACGRVILAKNYLDVYRFESWGGSVIP
TYSFGQQFTPTTLTLDSGVTRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKLLDRFYAI
KDSNTRFSPTKLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSTGTKRKAEVLETCLQQ
MKACFSDARTNKGKLLEAMAIFFERSNRSSSGEQQAVGAVVRRCGLCLESDMVLRQKPDG
NFMVGCLGYPQCRNVVWLPGSVSEASVTENTCITCSPGPVFKIQFKFRQQEIPPDYSVQH
LGCIGGCDDILRQLVEICGTGSRNSSNTSGRGRGNPTASSSAQRDNSRAQISCAYCRQTG
HLSNDCPSQASRGRTARAQEVDNGESSIPCNSCGAPCILRTANTANNRGRKFFSCQSSEC
NFFVWEDNLSGGRAERANTSASTSSGRGGRGRGRGCGQSGAHSSNVSFVSATGEPITGRC
FICGDPGHFANVCPRRG
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggccggaggcggagggcgggtgataagggtactaaatgtggctgaaaagccgtcggtg
gccaaggcagtgtcggggatactatcgaagaaccaaccaggtggcattagagtaagagac
ggacgttccaggtacaacaaaatctttgagttcaactacaccattcggaaccagccttgc
cagatgctgttcacatctgtcacgggacatctcatggagattgagtttcacgagcgttac
cggaaatggcactcgtgtgacccgctcgacctctataatgcgcctgttcggaagtttgtc
cctgaggataagttggatatcaaaaggacactggaggcagaagccagaagttgtcagtgg
attatattgtggctcgattgtgatagagaaggagaaaatattgcatttgaagtgttggat
gtatgtagacaagcgaatcataaccttactgtgtggagagctcggttctctgccttaatt
gacagggaaattcaccaatcagtgcagacccttgttcagccaaatcagttattttctgat
gctgtagatgttcggcaagagattgatcttcgtattggtgcttctttcacaagatttcag
acaatgcttctgagaggtgcatttgtccttgattttgctacagatgatagaaatcttgtc
ttgagctatggtccctgccagttccctacacttggctttgttgtggagcggtattgggag
atacaagcacatgaacctgaagaattttggacaattaactgtactcacaactcggatgaa
ggcactgctacctttaactggatgcgtggtcatctgtttgattacacatgtggagtaatg
atttatgagatgtgcatccaggaacccattgcaactgttaccaaggtcaaacaacaggag
aaactcaaatacccccctcatcctttaagtacaattgagcttgaaaagcgtgcatccaga
tacttccgtatgagttccgagcagacaatgaaggtggcagaagatttatatcaaaatggt
tttatcagttatcctcgcacagaaactgattgcttctcggataagaccgacttgcgtaca
atggtgcaagaacaagaaggtcatcctgtatggggcacatatgcgcagcgcctactagat
cctcaatcaggactctggagaaaccctagtggaggtgggcatgatgacaaagcccatcct
cctattcatccaactaaattttctgctggcgaaaccagatggagccaggatcaccataga
gtgtatgagttggttgttcgccattttttggcctgtgtttctcaaccagctgttggggct
gaaacaatagttgagattgatattgctggtgaatccttttctgcatgtgggagagtgata
cttgcaaaaaactaccttgatgtataccgctttgaatcatggggaggttcagtgatcccc
acatacagtttcggccaacagtttactccaactactttgacacttgattcaggagttaca
agacctcctccccttttaagtgaggctgatctattgggttgtatggacaaggctggcatt
ggaacagatgcaacaatgcatgatcatataaagaaactacttgatcgattttatgcaatt
aaggactcaaacactcgattctcgccaactaaactaggggaagcactagtaatgggatat
gatgatatgggttatgaactatggaaaccatatctccgggctatgatggaatgcgatatg
aaagccgttagcactggaaccaagagaaaggctgaggttctagaaacttgcttgcagcag
atgaaagcttgcttttcagatgccagaacaaacaaaggaaagctccttgaagccatggct
atcttctttgaaagatcaaacagatccagcagtggcgagcaacaagcagttggagctgtt
gttcggagatgtggactttgtctagagtcagatatggtgctcagacaaaagccggacggt
aacttcatggttggttgcttgggttacccacaatgcagaaatgttgtctggctacctgga
tctgtctcagaagcttctgttaccgagaatacatgcattacctgcagtccaggacctgtt
ttcaagattcagtttaaatttcgacaacaggaaataccgccagattacagtgttcaacat
ttaggttgcattggtggctgtgatgatattcttaggcagcttgtagaaatttgcggaact
ggttctcgcaatagttccaacacttcaggcagaggacgtgggaaccctacagcatccagc
agtgcacaaagagacaattccagagcacaaatttcttgtgcatactgcaggcaaacaggg
catttgtcgaatgattgtccttcacaggcttctcgtggtcgcactgctcgggctcaggaa
gttgacaatggagaatcttcaatcccttgtaattcgtgtggagcgccttgcattttgcgc
actgccaatactgccaacaacaggggaagaaagttcttttcatgtcaatcatcggagtgc
aactttttcgtatgggaagataatctcagtggaggaagagcagagcgtgcaaatacttct
gcatccactagcagcggaagaggtggccgtggtcgtggtcgtggctgtggccagagtggt
gcgcattccagtaacgtgtcatttgtgtcagcaacaggtgaaccaataactggcagatgt
ttcatctgcggtgatccaggtcattttgctaatgtttgcccacgtcgtggttga
DBGET
integrated database retrieval system
