Solanum pennellii: 107018979
Help
Entry
107018979 CDS
T04130
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107018979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107018979
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107018979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
107018979
NCBI-ProteinID:
XP_015075057
LinkDB
All DBs
Position
5:76667627..76671902
Genome browser
AA seq
853 aa
AA seq
DB search
MEREKSSKRARGSRDGDDDDHRRNRHRDEENRHRSDDRRRQDLERSIEREGNRDVGHDRE
DENQHQSDDRRRDRVREGSRDRAYDRERREITRDRDRREKSFELEVNREGSMERRNSRKR
KDRGENVDKKNVDEKRARDSEVKKDKLRVDNVKLMDKEDVEIDEEKGKGCEMRTVKEEPK
PELYEDGQDVDTIDTSVAMGSFSAASRTSPDKPLTRSDSPATKVSSISTTTENKGVNINK
FHKVLGKSSTDGAAHDTGKSAILSIDAKGNAYELKQRHKVLKEKLKRIPLLNKGANSTRD
GSSQMGSRESLKAPSTNVAILPPPVASSNAEILPTPGSARSTSTIATMVSANMLPSSLPH
VVGLTAQSYEAIKRAQEFSAKIEFRQDPECPSLINMFPGQMPPEVTIQPKLAKAPVLRLD
AFGREIDEQGNVVNVPKPSSTLKVNINKQNKESFQLLKPELDIDPDKNPHFDPRMGIDKN
KILRPKKMSFQFVEEGKWSRDAEIIKLKSQFGEIRTKELRTKQEQLAKAKAEPDINPNLI
EVSERIITKEKSKEPIPDVEWWEAPLLRSGAYGVMVDGNLTDDTLKMERITIYVEHPRPI
EPPAEPAPPPPQPLKLTKKEQKKMRTRRRMDQEREKQEMIRQGLLEPPKPKIKMSNLMRV
LGSEATQDPTKLEKEIRSAAAEREQAHIDRNLSRKLTPDEFREKKEKKLFDDPTIAPETV
VSVYRINDLSHPQYRFKVDVNAQENRMTGCAVILGDINVVVVEGGKKSIKRYGKLMLRRI
DWAAAVKKEDDDEDEDKPRNKCVLVWQGTVAKSSFHRFLVHECRTEAAARKVFADAGVLH
YWNLAVDFIDDEL
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggagagagaaaaatcgagtaagagagcaagaggatccagggacggcgatgacgacgat
caccgccgtaatcgccaccgtgacgaggagaaccgacaccggtccgatgatcggcgacgt
caagaccttgagagatcgattgagcgggaaggaaacagagatgtaggtcacgatcgcgag
gatgagaatcaacatcaatccgatgatcggcgacgagatcgtgtgagggaaggaagcaga
gatagagcttatgatcgtgaaaggcgtgagataacacgtgatcgggatagacgggagaaa
tcgtttgagttggaagttaacagagagggttcaatggagagaaggaattcgcgtaagagg
aaagatagaggagagaatgtggataagaagaatgtcgatgagaagagagctagggattcg
gaggttaagaaggataaactgagagttgacaatgtgaagttgatggataaggaagatgtg
gaaatcgatgaagaaaagggaaaaggatgtgaaatgagaactgtgaaggaagaaccgaaa
ccagagctctatgaggatggacaggatgttgataccattgatactagtgtagcaatggga
tcattcagtgcagcatcaaggacttcccctgataagcctttgactcgtagtgattctcct
gctaccaaggtatcttcaatttctaccacaactgaaaataagggagttaatattaacaaa
tttcataaggttcttgggaaatctagtacagatggggcagctcatgacactggcaagagt
gcaatcttatccattgatgctaaaggaaatgcatacgagctcaaacaaaggcataaagtg
ctgaaagaaaagcttaagaggattcctttgttaaacaagggtgccaactctacgagagat
ggaagttcacaaatgggttccagggagagccttaaagccccttcaaccaatgtggcgata
ttgccaccaccagttgcatcttcaaatgcagagatattacccactccaggttcagcacgt
agcacatcaactatagctaccatggtatctgcaaatatgctacccagtagcttgcctcat
gttgtgggcctcacagcacagagctatgaagcgataaagcgtgcgcaggagttttctgct
aagattgaattccggcaggacccggaatgtccctccctcattaacatgtttcctgggcaa
atgcctccagaggttacaattcagccaaaacttgctaaagcccctgttcttcgtttggat
gcatttggcagggaaattgatgagcagggaaatgtggtcaatgtgcctaagccatctagc
acccttaaggtaaacatcaataagcagaacaaagagagcttccaacttctcaaacctgaa
cttgacattgatcctgataaaaatcctcattttgatccgaggatgggcattgacaagaac
aaaatattgaggcccaagaagatgtcatttcaatttgtggaggaaggtaaatggtcccga
gatgcagaaataatcaagttaaagagccaatttggtgaaatacgaacgaaggagctgagg
acaaagcaagagcaattggcaaaggcaaaagcagagcctgacataaatccaaatcttatt
gaggtgtcagagaggattatcaccaaagaaaaatcaaaggaaccaatccctgatgttgag
tggtgggaagctcctctgttacgatctggtgcttatggtgttatggtcgacggtaactta
actgatgatacattgaagatggagaggatcaccatttatgtggaacacccccgtcctatt
gagcctcctgctgaacctgctccacctcctccacagccattgaagctgaccaagaaggag
cagaagaaaatgcgcacccggcgccgtatggatcaggagagagaaaagcaggaaatgata
cgtcagggcctgttagaaccaccaaaaccaaaaattaaaatgagcaatcttatgagagtc
cttggatcagaagccactcaggatcccacaaagcttgaaaaggagattagaagtgctgct
gctgagcgagagcaggctcatatagacagaaatctttctcggaagctcactcctgatgag
tttcgtgagaagaaagaaaagaaactctttgacgacccaactattgcgccagagacagta
gtttcagtatacaggatcaatgacctttcacaccctcaatatcgcttcaaggttgatgtc
aatgcacaggagaatcgcatgaccgggtgtgcggttatcttgggagatataaatgtggtg
gtagttgaaggtggtaaaaagtcaatcaagcgatatgggaaactaatgcttaggcgaata
gattgggctgctgctgttaagaaagaagacgatgacgaagatgaagataagcctcgcaac
aagtgtgtgttagtctggcaagggactgttgctaaatcgagctttcataggtttttggtt
cacgagtgcaggactgaggctgctgctcgtaaggtctttgctgatgctggggttcttcat
tactggaatttagctgtagacttcatagatgatgaactttaa
DBGET
integrated database retrieval system