KEGG   Solanum pennellii: 107019051
Entry
107019051         CDS       T04130                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9A
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
spen  Solanum pennellii
Pathway
spen03020  RNA polymerase
spen03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107019051
  09124 Replication and repair
   03420 Nucleotide excision repair
    107019051
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spen03021]
    107019051
   03400 DNA repair and recombination proteins [BR:spen03400]
    107019051
Transcription machinery [BR:spen03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     107019051
DNA repair and recombination proteins [BR:spen03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107019051
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Ogr_Delta Zn_ribbon_4 Zn_ribbon_RPAB4 Zn_ribbon_recom
Other DBs
NCBI-GeneID: 107019051
NCBI-ProteinID: XP_015075123
LinkDB
Position
5:complement(75484603..75488664)
AA seq 114 aa
MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEPAENNCVYRNEIHHSAAERTQVLQ
DVAADPTLPRTKSVRCSQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagtactatgaaattttgccgagaatgtaacaacattttgtatccaaaggaagataag
gagcagaagatcctactttatgcttgccgtaattgcgaccatcaggagcctgctgaaaac
aattgtgtgtacagaaatgagatacaccattctgctgcagaacgcacacaagtattgcag
gatgtagcagcagatccaactttgcctcgtacaaaatctgttcgatgttctcaatgtggt
catggagaagcggttttcttccaggcaactgcaaggggagaagaaggtatgacgctcttc
tttgtttgctgcaacccaaactgtggtcacaggtggagggattga

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