Solanum pennellii: 107019829
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Entry
107019829 CDS
T04130
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107019829
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107019829
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107019829
NCBI-ProteinID:
XP_015075684
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All DBs
Position
5:1813549..1817388
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AA seq
459 aa
AA seq
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MASISFNNSVIFLFSLLCFSSIIPKLYANIADFDPYLEKRAEEALQSSLAAYNENPESVT
QIFNKEVGETLLNGTRRHLKEKDKEDKNEKVDKDDKEGDEKSVDGCKAYNPIDKCWRCDK
NWANNRKALADCAKGFGHGTTGGKDGRFYVVTDPSDNNVEEPVPGTLRHAVIQEEPLWII
FEKSMIIRLKQELMINSNKTIDGRGVSVHVAYGGGLTLQFVQNVIVHNIRVHHILSKNGG
MIRDSVKHIGLRTVSDGDAISLFGANRIWIDHCTLTKGADGLVDAIMASTAITISNCKFN
HHNDVMLLGANDAFPQDKIMQVTVAFNRFGKGCIQRMPRCRWGFFHVVNNDYAKWEMYAI
GGTANPTIISQGNRFKAADNPNTKEVTNRNGAPEALWRNWQWRSEGDLFKNGAFFRESGP
EIKSTPFTQHTTIQFEPAKFVGRLTRKAGVIQCKIGKAC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcctctattagttttaataattcagttatttttctgttttcccttttatgtttttct
tctataatcccaaaattatatgctaatattgctgattttgatccttacttggaaaaaaga
gctgaagaagccctccaatcttctcttgctgcttataatgaaaatcctgaaagtgtcact
caaattttcaacaaagaagttggagaaacacttctcaatggcacaaggaggcatttgaag
gaaaaagataaagaggacaagaatgagaaggttgacaaggatgataaggaaggtgatgaa
aaaagtgttgatggatgcaaggcatacaatccaattgacaagtgttggagatgtgacaaa
aactgggctaataacaggaaggcactagcagactgtgctaagggatttggtcatggtaca
actggtggtaaagatggtagattctatgttgtcaccgatccatcggataacaacgtggag
gaacctgttcctgggaccctacgtcacgctgtcatccaagaggagccattgtggatcatc
ttcgagaagtcgatgatcatcaggttgaaacaagaacttatgatcaacagtaataagaca
attgatggcagaggtgtttctgttcatgttgcatatggaggtggacttaccttacaattt
gtgcagaatgtgattgtccacaacattagagttcatcacatcctttctaagaatggtggt
atgattagagattctgttaaacatattggtcttaggacagtgagtgatggtgatgctatt
tcccttttcggtgctaaccgtatctggatagatcattgtactttaaccaagggtgctgat
ggactcgtcgatgcaatcatggcttccactgctatcaccatttctaactgcaaattcaac
catcacaacgacgttatgcttttgggagcaaacgatgccttccctcaagataaaatcatg
caagttacagttgcattcaataggttcggaaagggatgtatccagaggatgccaaggtgc
aggtggggattcttccacgttgtcaacaacgactacgccaaatgggaaatgtatgctatt
ggtggcacagctaaccccaccatcattagccagggtaaccgtttcaaggctgccgacaat
cccaacactaaagaggtgacaaaccggaatggcgccccagaagctttgtggagaaactgg
caatggagatccgagggtgatttgttcaagaacggagccttctttagggagtctggacca
gaaatcaagagcactccattcacacaacataccacaatccaatttgagcctgctaaattt
gtaggtagactcactcgcaaggctggtgtaatccagtgcaagattggaaaagcatgctag
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