Solanum pennellii: 107020304
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Entry
107020304 CDS
T04130
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 23
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107020304
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
107020304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
Motif
Other DBs
NCBI-GeneID:
107020304
NCBI-ProteinID:
XP_015076092
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All DBs
Position
5:complement(22646620..22696234)
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AA seq
1608 aa
AA seq
DB search
MLRVPVSTPSSGEMEHNNTHQLRSRSHHQFHPSRPAILDLFNLYLGLKNSGQKLDDSIRE
PPNKTQKRVTAINRELPPRNEQFLLDFGQLQSQFTDKEQLSAVVESVLISLVIHCSSHAP
RAEFIQFAICSLSSIGFINWDSFLPSLLSSVSSTEISSRQANLPSAAVSSANLTSGLLPS
STTVASTSIFHSSNPASPLPAVHGIGSPLHSAAEPSSSAALSPMKSSDVNGTSQQSIAKV
NLLSNDNATSSLRQLCCKIILTGLDSNLKPVTHAEVLHHMLNWLINWDQKLHGVDELNSM
KYWKPDKALIKWLHSCLDVIWLLVENDKCRIPFYELLRSGLQFLENIPDDEALFTLILEI
HRRRDMMAMHMQMLDQHLHCPTFGTPRLLPQASANSSGEAVANMRYSPITYSSVLGEPLH
GEDLAASIQKGSLDWERALRCLKHALRNTPSPDWWRRVLLVAPCHRVHAQAPTPGAVFTS
EMVCEAVIERIVELLKLTNSEINCWQEWLIFSDIFFFLMKSGCIDFVEFVDKLVFRLQEG
DQQILRTNHVTWLLAQIIRVELVMNALNTDSRKVETTRKILSFHKEEKSSDPNNPQSILL
DFISSCQNLRIWTLNTATREYLNNEQLQKGKQIDEWWRQVNKGERMMDYMNLDDRSIGMF
WVVSYTMAQPACETVMNWLTSAGVTEHLPGPNLQSNERLMVMREVCPLPISLLSGLSINL
CLKVAFQLEESMFSGQAVPSIAMVETYCRLMLISPHSLFRSLLTHLTSRNPTTLTKPGNT
ILVFEILNYRFLSLYRYQGKSKTLMYDVTKMISTLKGKRGDHRIFRLAENLCMNLILSLR
DFFFVKREGKGPTEFTETLNRITIVTLAIIIKTRGIGEFEQLLYLQTMLEQILATSQHTW
SEKTLRYFPSILRDALSGRMDKRGLAIQAWQQAETTVINQCTQLLSPSADPSYVVTYINH
SFPQHRQYLCAGAWILMHGHPENINCTNLGRVLREFSPEEVTANIYTMVDVLLHHIHLEL
QRGHPLQDLMLKACGNLSVFIWNHELLPPDILLLALIDRDDDPHALRIVINLLDSKELQQ
RVKVYLLNRGPPEHWLSPGPFKRVELQKALGNYLSWKERYPTFFDDIAARLLPVIPLIIY
RLIENDAMDAADRILQVYSPFLHYYPLNFTFVRDILSYFYGHLPGKLILRILNILDIKKI
PFSESFPQHINSSNAAMCPPLDYLATLLLGLVNHVIPALNNSSKCAVMGDFANNSTRAPH
GKIPATSQSGTTNSFDGQKPYYQMQDPGISTQLTLETAVIELLSLPVSPSQIVSSLVQIV
VHIQPTLVQSSNGLHGAAGSSGQGSILPTSPSGGSTDSLGATRTTPSLSGLNTSNFVSRS
GYTCQQLSCLLIQACGLLLAQLPPEFHVQLYVEAARIIKESWWLTDAKRSVGELESAVSY
ALLDPTWAAQDNTSTAIGNIVALLHAFFCNLPQEWLEGTHLIIKHLRPVTSVAVLRISFR
IMGPLLPRLVNAHTLFSKTVSLLLNILVDVFGKNSQLSAPIEATEISDLIDFLHHVIHYE
VASSKPRSEILALFGRAAENLRPDVQHLLSHLNTDVNTSVYAKIVHNA
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgagttcccgtttccactccaagcagcggagaaatggagcataacaacacacac
cagttgaggtctcggtcccaccaccagtttcatccctctcgacctgccatccttgatctc
ttcaatttatacttaggactgaaaaattctggacaaaaattagatgattctatcagagaa
ccaccgaacaagacacagaagagagtaactgctattaacagagagcttcctccacgaaat
gagcaatttctcttagattttggacagctgcagagccaatttactgacaaggaacagcta
agtgcagtggtagagtctgttcttatttccctcgttattcattgcagtagtcacgcacct
cgtgcagaatttattcaatttgccatatgtagtttgtctagtataggattcataaactgg
gattctttcttgccttctcttctttcctccgtttcatcaactgagatatcctctagacag
gctaatctaccatctgctgctgtctcttctgctaatttaacatctggattgctcccttct
tccaccacagtagcgtctacctccatttttcactcatcaaatcctgcatctcctttgccc
gctgtccatggtattgggtcccctcttcattcagcagctgaaccctcatcttctgctgct
ttgtctcccatgaagtcttctgatgttaatggtactagccaacagtctattgcaaaagtg
aatttgttgtcaaatgataatgctacaagcagtctgcgtcagttatgttgcaaaattatt
ttaactggtctagattctaatcttaagccagtaacacatgccgaagttctccaccatatg
ttgaattggttgattaattgggaccaaaagttacatggtgttgatgaattaaacagtatg
aaatattggaaaccagataaggccctaattaagtggctacacagttgtttagatgttatt
tggttgctggttgagaatgataaatgccgtataccgttttatgaacttctccggagtggg
ttgcagtttttagaaaatataccagatgatgaagctctgttcactcttattttggagatc
catcggaggcgagatatgatggctatgcatatgcaaatgttggatcagcaccttcactgc
cctacatttgggacccctcgacttcttcctcaagcctctgcaaattcgtctggtgaagca
gttgctaacatgagatattcaccaattacatattctagtgtgcttggggaaccattgcat
ggagaggatcttgcagcttccattcaaaaaggaagcctggattgggagcgagctttgcgt
tgtttaaagcatgcacttcggaacactccatcaccagactggtggagacgtgtgcttctt
gtggctccctgtcacagggttcatgcccaggctccaactccgggtgctgtgtttacatcg
gaaatggtttgcgaggcagttattgaaagaattgttgaattattgaagttgacgaattca
gaaatcaattgctggcaggagtggcttatattctcagatatattcttttttctcatgaaa
agtggatgcattgattttgtggagttcgtggacaaattagtatttcgacttcaagagggt
gatcaacaaatacttaggacaaaccatgttacatggttacttgcacaaattattcgggtt
gaactagtgatgaatgctctaaatacagactcaagaaaggtggagacgactagaaaaatt
ctttcgttccataaagaggagaaaagctctgatcccaataatcctcaaagtatcctactt
gatttcattagcagttgtcagaacttgcgcatttggacactaaatacagcaacaagagaa
tacctgaataacgagcagctacaaaagggaaagcaaattgatgaatggtggagacaagtt
aacaaaggggaacgcatgatggattatatgaatttggatgatagatcaattgggatgttt
tgggttgtgtcctacacaatggctcagcctgcttgtgaaactgtgatgaactggttaacc
tccgcgggggttactgagcatttacctggaccaaatttgcagtccaatgagagattaatg
gtgatgcgtgaagtttgccccctgccgatatcattgttatcaggattgtccataaattta
tgcttgaaagtggcttttcaattggaagaatcaatgttttctggacaggctgtgcccagc
atcgctatggttgaaacatactgtaggttgatgctcatttctcctcattcattgtttcgt
tcgctcttaactcatctgacatcgaggaatcccaccacattgaccaagccaggaaacaca
atcttggtgtttgaaattcttaattatcgtttcctttcactctacaggtaccaaggtaag
agcaagacattgatgtatgatgtcaccaaaatgatttctacactgaagggaaaacgcgga
gatcatcgcattttcagattggctgagaacttatgtatgaatctgattttgtcgttgaga
gactttttctttgtgaagagggaagggaagggtccaactgagtttactgagactttaaat
aggataacaattgttactcttgcaatcataattaaaactcgtggaattggagagttcgaa
cagttactgtatcttcaaacaatgctggaacaaatcttagcaactagccagcatacctgg
tctgagaaaactttgcgctattttccttcaattttacgtgatgccttgagtgggcgaatg
gataaaaggggcttggcaatccaagcatggcagcaggcagaaacaactgttatcaatcaa
tgcacacagcttctttctccctcagctgatccctcatatgttgtgacttatattaaccat
agttttcctcagcaccgccagtatctctgtgctggtgcatggatactaatgcatgggcat
ccagaaaatattaactgcacaaaccttggacgtgttttgagagagttttctcctgaagag
gtgactgcaaatatttatacaatggtagatgtcctgcttcatcatattcacttggaacta
cagcgtggacatcccttgcaggatcttatgctaaaagcctgtggaaacctttcagttttc
atctggaaccatgagcttttgcctccagatatcctactgctggcacttattgaccgtgat
gatgatccacatgctttgcgcattgtaattaacttacttgacagtaaggagctccaacaa
agagtgaaagtttatctcttaaatcgtggcccgcctgagcattggctttcccctggacct
ttcaagcgtgtggaattgcagaaagctcttggaaattatctgtcatggaaggagaggtat
ccaacattttttgatgatattgctgcgcgcctgcttccagtcatcccccttatcatatat
agactcattgaaaatgacgctatggatgcggctgatagaattcttcaagtttattcaccc
ttccttcattactatcctctgaactttacgtttgttcgtgatatactttcttatttctat
ggtcatcttcctggaaagctaatactccgtatactgaatatcttagatattaaaaagata
ccattttcagagtcattcccgcaacatatcaactcatcaaatgcagccatgtgcccacca
ttggactacctcgctactcttttgttaggattggtgaatcatgttattcccgctttaaat
aatagctccaaatgtgcagtaatgggagattttgcaaataattctacccgtgctccccat
ggaaagatcccagcaacatcacaatctgggacaactaattcttttgacgggcagaaacct
tattatcagatgcaagaccctgggatatccacccagcttactcttgaaacagctgtcata
gaattactttctcttcctgtttcaccatcacagattgtctcatctctagttcaaattgtt
gttcacatacaaccaacccttgttcaatccagcaacgggctgcatggagctgctggtagt
tcaggacaaggctctattttgcctacttctccttcaggaggaagcactgattctttgggt
gcaactaggacgactccatcactttcaggattgaatacttctaattttgtttcacgcagt
ggttatacttgccagcagctgtcttgcttgttaatccaagcatgtggtcttcttttggca
caacttcctccagaatttcatgtgcagctatatgttgaagctgcacgcataataaaagaa
agttggtggcttactgatgctaaaaggtctgtgggtgaattagaatcggctgttagttat
gctctactagatcccacctgggctgcacaggataatacctcaacagccattggtaatatt
gtcgcactgctacatgctttcttctgtaacctcccacaagaatggctcgagggaactcat
cttatcattaagcaccttaggcctgtgacatctgttgcagtattaagaatatcatttcgc
attatgggtcccttgcttccgaggttggtaaatgctcatacccttttcagtaagacagtg
tcgctgcttttgaatattttggtggatgtgtttgggaagaactcacagctgtcagcacct
attgaagcaacggaaataagtgatcttatcgacttcctgcatcatgttattcattacgag
gtggcatctagtaaacccagatcagaaattctggctctttttggaagagcagcagaaaat
ttgcgtccagatgttcaacatcttctttcccacctcaacactgatgtaaacacttcggtt
tatgcaaaaatcgtccacaatgcttaa
DBGET
integrated database retrieval system
