Solanum pennellii: 107020383
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Entry
107020383 CDS
T04130
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
spen
Solanum pennellii
Pathway
spen04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
107020383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107020383
Membrane trafficking [BR:
spen04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
107020383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Clathrin
TPR_VPS8_2
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WDR55
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WD40
Beta-prop_HPS5
Beta-prop_THOC3
WD40_Prp19
WD40_Gbeta
Beta-prop_Aladin
zf-RING_Vps41
zf-RING_2
zf_RING_Vps8
zf-C3HC4_2
EIF3I
Motif
Other DBs
NCBI-GeneID:
107020383
NCBI-ProteinID:
XP_015076210
UniProt:
A0ABM1GUI6
LinkDB
All DBs
Position
5:complement(69109034..69126641)
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AA seq
1908 aa
AA seq
DB search
MELDLDSFLDSHADDDDDDDHLLHHRTVDEILLNHSSSSSSSPSPPSSPSALHRRNDVDR
RNRSAESSFQSLKLPLGLHQTESRAESISSKQSSEFSSPPAGQSVLPPFFSGVIRSNSKP
GDALAAAFAASRSIPAPRAAAIKSKKASSGVLQRALESDISASIDPPACTDANISDKNLD
TFGRTVFLHEIGSETIGLEGNIKDQFQAGQVQLSDTDNGSREVSTVDAGMDSINVYDAGD
VSVVDDSVKSNLNEALSYTGTQVESPSRTESDSVFHDSSGLDEIEDRQAQPLFGGEENVV
SADSSEEAGTKEILSSPVYETLSDEDLTKNDGAKLEHENVITQSKEGEVSSNGDETNSLN
DAASIIDELVLQQESMRDSTNPQKNYHSALKPLELAEEAEKKQAFTAMHLEEGASAQPMR
LDGVHRSSNVLGYFDVDENNTITQTLLSQAFRREHGSSQVLAVHLKYIAVGMSKGSILVM
PSRYSSSHHADNMDAKMLIFGLSGDKSHAPVTCLSFNQQGDMLFAGYGDGHYTVWDVQRA
SVLKVVTEHKAPVVHLLYLGQDSQVTRQFIVLSGDTKGVVNLDRFTVFPLFNRISLSKSQ
ELLNESNSTTLCAVSLLSGESYGSAMVASQEGGSPSLIEEGVVILGTHQYALVAKLSPTF
KVYAKIPRPDGAREGSMPYAAWKSESISTETYEKVSLLAIAWDRRVQVAKLVKSELKVCW
RWTTDSSAVGLAWLDEQILVILTATGQLCLFSKDGNLIHQRSFSMDGSCGENLMSYHAYF
SNVFGNPEKAHHNCLGVRGATLYILRPSQLVVSRLLSWKERIEVLHKAGDWTSALNMAMS
LYDGQAHAVIDLPKNLDDVQKTLMPYLVQLLLSYVDEVFSYIAVTSGNPHGQPGQSNELK
YDADFVNPDIKEQYTLVGGVSVEFCLHIKRLDVLFDEIFPKYVAVNHKDTFLELLEPYIL
KDMLGSLPPEIMQALVEHYSTKGWLQRVEQCVLHMDMLSLDFNQVVRLCREHRLHGALIY
LFNKGLDDFRTPLEELFLILRDSKRESAIALGYKMLVYLKYCFQGFAFPPGRGAFPSTRV
PSLKRELLQFLLEEASSPNSSTAMCLPYSVPNPNLLSLLEIDTEATLDVLRYAFVEGENE
SSSPASNPADSKTETTEVNISTIEGISLVQKVVDVLAVILNLSYFQTGGTINNKDEICTD
IWPTRKDTEYILDFISFLIASEKAKVSKDTLCQIFEYLTLGNETYTNVSGRIVETFNRKQ
KQLTALLEVLPEEDWDAHYLLNLCERAQLHQVCGLIHAITHQYLSALDSYMKAVDEPILA
FVYVDDMLRQLRGKEYDDFRSAVISRIPDLLKLNREGTFFLIVNHFGEESDYILSQLQAN
PESLFLYLKTLIEVHPTGTLNFFTLRKLDASDFPSGRNKKHISSEVYLEALSDLPKLLQN
YPIHITDEMTELYIELLCRYERKSVLRFLETSESYRVERCLHLCQEYGVIDAAAFLLERV
GDIGSALLLVISSLSDKFILLDTAVESEHCATAPDHFKAILSKKEVTDIIEILRTCIGLC
QRNSPRLDSDEAESLWFQLLDSFCEPLMDSHDHMIRYKEDECVQEGERACKIQWKVSKSH
RNAHILRKLLSVFIKEIVEGMIGYVSLPRIILKLLSDNETQEFGDFKPTILGMLGTYDFE
RRILDTAKSLIEDDTYSSLSLLKRGASHGFAPRNLLCCICNCPLTKDFSASSIQIFTCGH
ATHQQCEPQENEASIRGNSTGCPICMPRKNSEKLRSKSMLVENGLVKSISKSHQTNGTTG
LYPHENDGFDNSYGLQSVSRFDLLLNLQKTHQSMQLENIPQLRLAPPAVYHEKVKKRNVP
SAGESSNGLAKPEKPSRSKHLRDVKLKGSSLRFPLKTNIFGKEKNIKL
NT seq
5727 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgacctggattcatttttagattcacatgctgacgatgatgatgatgatgat
cacttactgcatcatcgcactgttgatgaaattctcctcaaccactcttcctcttcttct
tcttcgccttctcctccttcttctccatctgctttgcatagacgcaatgatgtagatcgt
cgcaatcgctcggcagaatcatcttttcaatccttaaaactgccattagggttgcatcag
acagagtcaagagcagagtcaattagtagtaaacaatcgagtgaattttcttcaccacca
gcaggtcagagtgtgttgccaccatttttcagtggggtcatcagatcaaattcaaaaccc
ggagatgccttggctgcggctttcgctgcatcccgctccattcccgcgcctcgtgcagca
gccatcaaatccaaaaaagcaagctccggagtgctgcaaagggccttggaaagtgatata
tcggcttccatagatcctccagcttgcactgatgccaacatttctgacaaaaatcttgat
acttttgggcgcacagtgtttttacacgagattggttctgagactattggtttggaaggt
aacataaaggatcagtttcaagctggtcaagttcaactaagtgatacagacaatggtagt
agggaggtatctacagtggatgcaggtatggacagtataaatgtttatgatgcaggtgat
gtttctgtggtggatgattcagttaaaagtaatttgaatgaagctctaagttatactgga
actcaagtggaatctcctagtagaactgaatcagactcggtttttcatgatagctctggg
ttggatgagattgaagatagacaagctcaacctttatttggaggtgaagaaaatgttgta
agtgcggatagcagcgaagaagctggtactaaggagatactctcttctccagtctatgag
actctttctgatgaagatttgactaagaatgatggtgcaaagcttgagcatgaaaatgta
attactcaatccaaagaaggagaggtcagttccaatggagatgaaaccaattctttaaat
gatgctgcaagtataattgatgagttagttttacagcaggaaagtatgagggatagtaca
aatcctcaaaagaattaccattctgccttgaagcccctagaattggctgaggaagctgaa
aagaagcaggccttcacggctatgcatttagaagagggtgcttctgctcaaccaatgagg
cttgatggagttcataggagttctaatgtcctgggttactttgatgtagatgagaacaat
accatcacccaaaccctattatctcaagcttttaggcgtgagcatggatcttcacaggtc
ctggcagttcacctcaaatacattgctgtgggaatgtccaaaggatcaattcttgtgatg
ccaagcagatactcctcctcacatcatgcggataacatggatgctaagatgttgatattt
ggattatcgggagataaatctcatgcccctgtaacttgcttgagctttaatcagcaaggg
gacatgctctttgccggatatggtgatgggcattacactgtatgggacgttcaaagggcc
tctgtgcttaaagttgtcactgaacataaagctccagttgttcaccttttatatttaggg
caagattctcaagttactcgacagtttattgtgctcagcggtgatactaaaggtgtagtt
aacttagaccggtttacagtgttccccttgttcaatagaatctccctttcgaagtcgcag
gaactgctaaatgaaagcaacagcactacattatgtgcggtgtcactactatctggtgaa
agttatggaagtgctatggtggcttctcaagagggaggcagcccttctttgattgaggaa
ggtgtggtcatacttggcacacaccaatatgctctagtggcaaaattaagccccacattt
aaagtttatgctaaaattccacgtcctgatggtgctagggagggttcaatgccctatgct
gcttggaaatcagaaagtatttctactgaaacatatgaaaaagtttcactgcttgcaatt
gcttgggatcgaagagttcaggttgcaaagctggtgaaatctgagctaaaagtctgttgg
agatggacgacggatagctcagcagttgggctggcatggttggacgaacagattttggta
attctcacagcaactggacagctttgtttgttttcaaaagatgggaatttgatccatcag
agaagtttttctatggatggatcttgtggagagaatctcatgtcataccatgcctacttc
agcaatgtctttggaaatcctgagaaagctcatcacaattgcttaggtgtcaggggggca
actttgtacattcttcggccatcccagcttgttgtttcacgccttctttcctggaaggaa
cgtatagaagttttacataaagcaggtgactggacgagtgcactgaacatggcaatgtct
ctttatgatggtcaagcacatgctgttattgaccttccaaagaatttggatgatgtgcag
aagacccttatgccatatcttgtacaactgctgttgtcatatgtagatgaggtgttctcc
tacatagcagtgacatctggcaatccacatgggcagccaggccaatcaaatgaattgaag
tatgatgctgactttgtgaatcctgatattaaggagcagtacactctggttggtggtgtt
tccgttgaattctgtcttcatattaagagacttgatgttctctttgatgaaatttttcca
aagtatgttgcagtgaatcacaaggatacatttttggagcttctggagccatatatattg
aaagacatgctaggatctttaccacctgagataatgcaagcactagtggagcactatagc
actaaaggttggttacagcgtgttgaacagtgtgttctccacatggacatgttgtccctg
gatttcaatcaggttgttcgcctatgcagggagcataggctgcatggtgcattgatctat
ttgttcaacaaaggccttgatgattttaggactccattggaagagctctttttaattttg
cgcgatagcaaaagagaaagtgctattgctcttgggtacaagatgcttgtttacctcaag
tactgcttccaaggttttgcttttcctccagggcgtggagcattcccttccacacgtgtg
ccatctcttaaaagagagcttctgcaatttttgttggaggaagcgagctctccaaattct
tcgacagcaatgtgcttaccttacagtgtaccaaacccaaaccttctctctctgttagag
attgacacagaggccaccttggatgttttgcgatatgcatttgtagaaggtgaaaatgaa
agttccagtcctgcatcgaatccagccgattcaaagacggaaacaactgaagtaaacatt
tcaactattgaaggcataagcttagttcagaaagtagtagatgtccttgcagtcattctt
aatctgagttatttccaaactggtggtaccattaacaataaagatgaaatatgtactgac
atttggcctacaaggaaagataccgaatacatattagattttatttcctttttaattgcc
tctgaaaaagctaaggtttctaaagataccctttgtcaaatttttgagtacctgacactg
ggtaatgaaacttacacaaacgtttctgggcggatagttgaaacattcaataggaaacag
aagcaactgactgcacttttagaagttttgccagaggaagactgggatgcgcactactta
ctgaatttatgtgagagggctcagctgcatcaggtctgcggcttaattcatgccatcaca
catcagtatctttctgctctggacagttatatgaaagctgttgatgagcctattcttgct
tttgtatatgttgatgacatgttgcggcaacttagaggcaaagaatatgatgatttcaga
tcagcagtcatttctcgaatcccagatctactcaagttgaacagggaaggaacttttttt
ctgattgtcaatcattttggagaggagagcgattacattttgtctcagctgcaggctaat
ccagaaagtcttttcctttatctgaagactctcattgaagttcatccaacaggcacccta
aacttctttactttaagaaaacttgatgcttcagacttccccagtggaagaaataagaaa
catatatcttctgaagtctacctggaagccttgtctgacttacctaaactcctgcagaac
tatccaattcacataactgatgaaatgacggagctctatattgagctattatgtaggtac
gagcgtaagtcagttctcagattcttggagacttccgaaagctacagggtggagcgctgc
ttgcatttatgccaggagtatggagttatagacgcagcagctttcttgttagaaagggtt
ggtgacatcggaagcgcccttttgcttgttatatcttcactcagtgataaatttatcctg
cttgatactgctgttgaaagtgaacattgtgccacggctccggaccatttcaaagctatt
ttaagcaagaaagaggtcactgacataatagagattttacgcacttgtattggactgtgc
cagaggaacagcccccgattggactccgatgaagcagagagtctgtggtttcaattgctt
gattctttttgtgagcctttgatggattcacatgatcatatgataagatataaagaagat
gaatgcgtgcaagaaggcgagcgggcttgcaaaattcagtggaaggtgtcaaaatctcat
agaaatgctcacatccttaggaaattgctctctgtgtttatcaaagagattgttgaagga
atgattggatatgtaagcctcccgaggatcatattaaagcttctttcagataatgagaca
caggaatttggtgatttcaaacctactatactggggatgcttggaacatatgactttgag
aggcggattttggatacagctaaatcattgattgaagatgatacatattcctccttgagc
ttactgaaaagaggagcttctcatggatttgcacctcggaacctcctatgttgcatttgt
aactgtcccctcacaaaagatttctcagcttctagcattcaaatttttacttgtggtcat
gcaacacatcagcaatgtgaacctcaggaaaatgaagcatcaatcaggggtaactcaaca
ggatgtcctatttgtatgccaagaaagaattcggagaagttgagaagtaaatctatgctt
gtggagaatggattggtgaagtctatatcaaaatctcatcaaacaaatggtacgactggt
ctatatccacacgagaatgatggttttgacaactcctacggacttcagtctgtttcaagg
tttgacctcctccttaatcttcaaaaaacccatcagtctatgcaactagagaatatccct
cagttgaggcttgcaccacctgctgtgtaccatgagaaggttaagaaaagaaatgtaccc
tcggctggagagagcagcaatggtctggcaaaaccggagaaaccaagcaggagcaagcat
ctcagagacgtaaaactgaagggatcgtctttaaggttcccccttaaaacaaatatattt
ggtaaagagaagaacattaagctgtga
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