Solanum pennellii: 107020507
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Entry
107020507 CDS
T04130
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X2
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107020507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107020507
03110 Chaperones and folding catalysts [BR:
spen03110
]
107020507
03029 Mitochondrial biogenesis [BR:
spen03029
]
107020507
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spen04147
]
107020507
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
107020507
Messenger RNA biogenesis [BR:
spen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
107020507
Chaperones and folding catalysts [BR:
spen03110
]
Heat shock proteins
HSP60 / Chaperonin
107020507
Mitochondrial biogenesis [BR:
spen03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
107020507
Exosome [BR:
spen04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107020507
Exosomal proteins of other body fluids (saliva and urine)
107020507
Exosomal proteins of breast cancer cells
107020507
Exosomal proteins of colorectal cancer cells
107020507
Exosomal proteins of bladder cancer cells
107020507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
107020507
NCBI-ProteinID:
XP_015076385
LinkDB
All DBs
Position
5:4922856..4926912
Genome browser
AA seq
606 aa
AA seq
DB search
MSCCLNHLPTITLKNGSVNRISKRVSCSMLNTRAMAKELYFNHDGSTTKKLLAGVDLVAE
LVGVTLGPKGRNVVLGNKYGPPKIVNDGETVLKEIQLDDPLEYVGVKLVREAGAKTNNLA
GDGCTTSIVLARGLIAEGVKVTAMGANVVQVSRGIEKTAKALISELKLMSREVEDHELED
VAAVSAGNDYAIGNMISEALRQVGREGVVTIEKGNSTKTNLEVVEGMQFDRGYLSPYFVT
DRRKRIAELHDCKLLLVDKKISNPKELVKILDNAVKEKYPVLIIAEGIEQDALAPVIRNK
LRGVLKVAAIKAPSFGERKSHYLDDIAILTGGTVIRDDIGLTLENAHKDLLGSASKVVIT
KDSTLIVTDGNTRTAVSKRVSQIQNLVENTEEKFQKKILNERIARLSGGIAIIQVGAQTQ
VELKDKQLRIEDALNAARAATEEGVVVGGGCCLLRLSSKVDAIKETLDNEDQKIGADIFK
RALSYPAKQIAKNAGVNGSIVVEKILSVDDMKYGYNAARDRYEDLMAAKILDPTKVVRCC
VEHAAAVAKTFLISDAVVIDIPGPVSRQIRPPPPPPPPMPTLGTPRPTNNYSSRLSGLSG
LKATGL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgagttgctgtttgaatcatttacctacaattactttgaaaaatggttcagtaaacaga
atttctaaaagggtttcttgttctatgttgaacacaagagctatggctaaagaattgtac
tttaatcatgatggttctacaacaaagaagcttttggcaggtgtggatttggtggcagag
ctggttggtgtaactttgggtccaaaaggaagaaatgtagttcttggaaataagtatggt
cctccaaagattgttaatgatggtgaaactgttctaaaagagattcagctggacgatcct
ctggaatatgtcggagtaaagttggttcgagaagctggtgccaagactaataatcttgct
ggtgatggttgcacaacatctatagtgcttgctcgaggtctgattgctgaaggtgtcaag
gttactgcaatgggcgcaaatgttgtccaagtgtctcgtggaattgagaaaactgctaaa
gccctcatttctgagctcaagttgatgtccagagaggttgaggatcacgagctggaagat
gttgcggctgttagtgctggcaatgactatgccatcgggaacatgatctcggaagctctt
agacaggtcggaagagaaggagttgtcacaattgaaaaagggaactctactaaaaccaat
ctagaagttgtcgaaggaatgcagtttgatcgtggttatttatcaccttattttgtaact
gatcgacgaaagaggattgccgagcttcacgattgtaagttgcttttggttgataaaaag
atttcaaacccgaaggagttggttaaaattttggacaatgcagtcaaggagaagtacccg
gttttgatcatcgcagagggcattgaacaagacgctctggctccagtgattaggaacaag
ctcaggggtgtcctaaaggtagctgcaataaaagctccatcttttggggagcgcaagagt
cattacttagatgacatcgctatcttgactggaggaactgtgatcagagatgacataggg
ttgactctcgaaaatgcccacaaggacttgttgggcagtgcttcaaaggtggtgattacg
aaagactctacactgatagttactgatggaaatactcgaacagctgtttcaaagagagtt
tcacagatacaaaatcttgttgagaacacagaagaaaaattccaaaagaaaatcttgaac
gaaagaattgcaagattatccggtggtattgccatcattcaggtgggagcacaaacacag
gttgagttgaaagataaacaactacggattgaggatgcgctcaatgcagcacgggctgct
actgaggaaggagtcgtagtgggcggtggctgttgtctgctgagactatcatcaaaggtg
gatgctatcaaagaaacgctagacaatgaggatcagaagataggagctgatatattcaaa
agagcactatcctatccggcaaaacagatagcaaagaatgctggtgtaaatgggagcatt
gttgtagagaagatattgtcagtcgatgacatgaaatatggatataatgctgcaagagac
agatacgaagatttgatggctgccaaaattttagatcctacaaaggttgttagatgttgc
gtggagcatgcagcagcagttgccaagacgttcctgatatcagatgccgttgtcattgac
atccccggaccagtatctagacaaataagaccaccaccaccaccgccgccgccaatgcca
actttagggactcctcgtcctaccaacaactatagttcaaggctgtctggtctatcaggt
ctaaaggcaactggtctttaa
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