Solanum pennellii: 107020509
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Entry
107020509 CDS
T04130
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107020509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107020509
03041 Spliceosome [BR:
spen03041
]
107020509
03009 Ribosome biogenesis [BR:
spen03009
]
107020509
03016 Transfer RNA biogenesis [BR:
spen03016
]
107020509
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107020509
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107020509
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107020509
Complex C
U4/U6.U5 tri-SnRNP related factors
107020509
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Helicases
107020509
Transfer RNA biogenesis [BR:
spen03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107020509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
107020509
NCBI-ProteinID:
XP_015076388
LinkDB
All DBs
Position
5:70741872..70750126
Genome browser
AA seq
996 aa
AA seq
DB search
MESSPAAVKRKEPEVNSDEKEVPELNSSSKRANLTRTCVHEVAVPSSYTSTNDESVHGTL
SNPCYNGEMAKMYPFKLDPFQEVSVACLERNESILVSAHTSAGKTAVAEYAIAMSFRDKQ
RVIYTSPLKALSNQKYRELSHEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICNIHKQP
CHVVYTDFRPTPLQHYMFPMGGSGLYLVIDENEQFREVNFLKMQDSFAKKKVGDGSNNAN
ARVRGRIAKGGSTSGGVSDICKIVKMIMERKFQPVIVFSFSRRECEQHAMSMPKLDFNTE
EEKEVVKEVFHNAVDCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEG
LIKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGI
CIIMIDEKMEMDSIKDMVLGKPAPLVSTFRLSYYTILNLLSHAQGQFTAEHVIKHSFHQF
QHEKALPDIGKRVSKLEKEAAKLDASGEGEVAEYHKLKLEIAQREKKLMAEITRPERVLH
FLLPGRLVKVWEGGKDWGWGVVVNVVKKPPAASGSMPAALSASRSTGYIVDTLLHCSLGS
GENGSQPKPCPPRPGEKGEMHVVPVQLPLISSLSKLRISVPADLRPLEARQSILLAVQEL
QKRFPQGLPKLNPVKDMGFEDPEFVDIVNQIEELEKKLFAHPLHKSQDEHQLKSFQKKAE
VNHEIQQLKSKMRDSQLQKFRDELKNRSQVLKKLGHIDADGVVLLKGRAACLIDTGDELL
VTELMLNGTFNDLDHHQTAALASCFIPGDKTNEQIHLRAELTKPLQQLQDTARRIAEIQR
ECKLEINIEEYVEASVRPFLMDVIYCWSKGASFAEVIQMTDIFEGSIIRLVRRLDEFLNQ
LKGAAHAAGEVELENKFAAASESLRRGIMFANSLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggagtcttctccggctgccgttaaacggaaggaaccggaggtgaattccgacgagaag
gaagtcccggagctaaattcatcttccaagagagcaaatttaactagaacctgcgtgcac
gaggtagcagttccatctagttacacttcaacaaatgacgaatcagttcacggaactctt
tcaaatccttgttacaatggtgaaatggcgaaaatgtacccattcaagctcgacccattt
caggaagtgtcagttgcatgcttggaacgaaatgaatcaatccttgtatcagcacatacc
tccgctgggaaaactgctgttgctgagtacgcgattgcaatgtcgtttagggataaacaa
agggttatttacacttcgcctttgaaagctttgagtaatcagaagtacagagagttaagt
catgagttttctgatgttggtttgatgactggtgatgttacgctttcaccaaatgcgagt
tgtttggtgatgacgacggagattttaaggggtatgttgtataggggttctgaggtgtta
aaggaagttgcttgggttatatttgatgagatacattacatgaaggatcgtgaaagaggg
gttgtttgggaagagagtattatattcttgccaccagctatcaagatggtttttctttca
gcaactatgtctaatgctactcagtttgctgaatggatatgcaatattcataaacagcca
tgtcatgtggtctacactgattttcggcctaccccgttgcagcattatatgtttccaatg
ggcggttctggattgtatcttgttattgatgaaaatgagcagtttagggaggtcaatttt
ttgaagatgcaggacagttttgcaaagaagaaagtgggagatggaagcaacaatgcaaat
gctagggttagaggtagaattgctaaaggtggctctacttctgggggtgtctcagatatc
tgcaaaattgtcaagatgatcatggaacggaagtttcagccagtcattgtgttcagtttt
agtagaagagaatgcgaacaacatgcaatgtctatgcccaaacttgattttaatactgaa
gaggagaaggaagtagtgaaggaggttttccataatgcagtggattgcttgagcgaggaa
gatagaaacttaccagctattgaattgatgttgcccctacttcagcgtgggattgctgtt
caccactctggcctgcttcctgttataaaggaacttgtggaacttctcttccaagaagga
ctcatcaaggctctttttgcaacagagactttcgccatggggctaaacatgcctgcaaaa
actgttgtctttaccagtgtaaagaaatgggatggtgatagtcatcgttacattggatct
ggtgagtatatacagatgagtggaagagcaggacgtcgtggaaaagatgaccgtggtatt
tgtattatcatgattgatgagaagatggagatggatagcatcaaggacatggttttgggt
aaaccagctccattagtcagcacgtttaggctgagttactatacaattctgaatttattg
agtcatgctcaaggccaatttactgccgagcatgttatcaaacactcattccaccagttt
cagcatgagaaggcgttacctgacattggaaagagggtctctaagctggaaaaagaagct
gcaaagcttgatgcatcaggggagggtgaggttgcagaatatcataaactaaagcttgag
atagcacaacgcgaaaaaaaactgatggctgaaataacacggcctgaaagggttctccat
tttcttcttcctggtaggctggtcaaggtatgggaaggtggaaaagattggggttggggt
gttgtagtcaatgtggtaaaaaagcctccagctgcgtcggggtctatgcctgctgcactc
tctgcttcacgtagcacgggctatattgtggataccctacttcattgctctcttggttct
ggcgaaaatggttctcaacccaaaccatgtccacctcgtccaggggagaagggagaaatg
catgtagttcctgttcaattgcccctgatttcttccctcagtaagcttcgaatatctgtt
cctgcggatcttcggccattggaggcaaggcaaagcatccttcttgctgttcaggagctt
cagaaacgttttcctcaaggcctcccaaagcttaaccctgtaaaggacatgggatttgaa
gatcctgaatttgttgatatagtgaaccagattgaagaactggagaaaaaattgttcgct
catccactacacaagtcacaagatgaacatcaacttaagagtttccaaaagaaggcggaa
gtgaaccatgaaattcaacagctcaagtcgaaaatgcgggattcacagcttcaaaaattt
cgcgatgaacttaaaaaccgttcccaagtcttgaagaagctgggtcacatagatgctgat
ggtgttgtgctgttgaagggacgagcagcctgcttgatagacactggggatgaactcctt
gtgacagaattgatgttgaatggtacattcaatgatcttgatcatcatcaaaccgcggct
ctggcaagttgctttatcccaggagacaaaacaaatgaacaaatacatttaagagctgag
ctaactaaaccattacaacagctgcaagatactgcaagaagaatagcagagatacaacgt
gaatgcaagttggagataaacattgaagagtatgtagaggcatcagtacggccattcttg
atggatgtcatctactgttggtcgaagggagcatctttcgcggaggttatacaaatgact
gatatctttgaaggtagcatcattcggctagtaagaaggcttgatgaatttttgaaccag
ttaaaaggtgctgcacatgctgcgggagaagtagaattggagaacaaatttgctgctgcc
agtgagagccttcgacgaggaataatgtttgcaaattctctttacctctag
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integrated database retrieval system
