Solanum pennellii: 107020582
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Entry
107020582 CDS
T04130
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107020582
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107020582
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107020582
NCBI-ProteinID:
XP_015076494
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Position
5:77192276..77195275
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AA seq
494 aa
AA seq
DB search
MISLTFILSFFFFLILSFSSLITSTSNNLTLSHQHPFPESVVQQVNRRINESISRRQISD
TTVINYQCLTGNPIDDCWRCDPNWVDNRQQLADCAIGFGHGAVGGKGGRYYLVSDPSDYD
TVNPTPGTLRHAVIQDEPLWITFAGDMIIRLKHELMINNYKTIDGRGANVHVTGGGCITL
QYVTNVIIHNIHVYNCIPSGNSNIRQSTTQVGWRGMSDGDGISIYSSRNIWIDHCALSHC
TDGLIDAIMGSTAITISNSYFTHHDKVMLLGHDDRYVPDVGMQVTIAFNHFGEGLVQRMP
RCRRGYIHVVNNDFTEWQMYAIGGSANPTINSQGNRFTAPEDPNAKEVTKRVDVDERDWT
EWNWRTEGDEMVNGAYFVPSGDGISNQYALASSMEPKSAFLIEQLTMNAGVIGVPRDTTV
AMSFGGRTRTTIAANRSSSVRPSRSNDGDGGFLEKVFGSVASAGSSTSSPSSSTITILFS
LLILYIITNNIGLL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgatttcattaactttcattctctcatttttcttcttcttaatcttgtcattttcttca
ctaattacatctacttccaataatcttacactttctcatcagcacccttttcctgaatct
gttgttcaacaagtaaacaggaggatcaatgaatccatttcaagaaggcaaatatctgat
acaacggtaataaattaccaatgtctaacgggcaatccgatcgacgactgctggcggtgc
gacccgaactgggtcgacaaccgccagcagctagcggattgcgccatcgggttcggtcac
ggtgcagtcggagggaaaggtggccggtattacctggttagcgatccctccgactatgac
accgtgaaccctacccctggaaccctccggcacgcggtgatccaggatgagcctctctgg
atcaccttcgccggagacatgatcataagactcaaacacgagcttatgatcaataattac
aagacgatagatggacgtggcgcgaacgtccacgtcacgggtggtggatgtatcacatta
caatatgttacaaatgttattatacataatatacatgtatacaattgtataccatcaggt
aatagtaacataagacaaagtacaacacaagttggatggagaggaatgtcagatggtgat
ggaatatcaatttatagttcaagaaatatatggattgatcattgtgctttgtctcattgt
actgatggcttaattgatgctatcatgggatcaacagctataactatatctaatagctat
ttcacacaccatgacaaagttatgcttttagggcacgacgatcgatacgtacccgatgtt
ggtatgcaggtgacaatagcatttaatcattttggagaaggattagtacaaagaatgcca
agatgtagaagaggatatatacatgtagtaaacaatgattttactgaatggcaaatgtat
gcaattggtggaagtgctaatcctacaattaatagccaaggcaatcgttttactgcacca
gaagatccaaatgccaaagaggtgacgaagcgtgtggacgtggacgagagggattggaca
gagtggaactggaggacagaaggggatgaaatggtaaatggagcatattttgttccttca
ggtgatggaattagcaaccaatatgctttggcatcaagcatggagcctaaatctgcattt
ctcattgagcaactcactatgaatgctggtgttattggtgtccccagggataccactgtg
gccatgtcatttggtgggagaaccagaacaaccattgccgccaaccggagcagtagtgtt
agaccttcaaggtctaacgatggtgatggcggtttcttagaaaaggtatttgggagcgtt
gcatcggcaggatcatcaacatcatcaccttcaagttcaaccatcaccatcttgttttct
cttctaattttgtatataatcaccaacaatattgggctattataa
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