Solanum pennellii: 107020593
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Entry
107020593 CDS
T04130
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
spen
Solanum pennellii
Pathway
spen03030
DNA replication
spen03420
Nucleotide excision repair
spen03430
Mismatch repair
spen03440
Homologous recombination
spen03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107020593
03420 Nucleotide excision repair
107020593
03430 Mismatch repair
107020593
03440 Homologous recombination
107020593
03460 Fanconi anemia pathway
107020593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spen03000
]
107020593
03032 DNA replication proteins [BR:
spen03032
]
107020593
03400 DNA repair and recombination proteins [BR:
spen03400
]
107020593
Transcription factors [BR:
spen03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107020593
DNA replication proteins [BR:
spen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107020593
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107020593
MMR (mismatch excision repair)
107020593
DSBR (double strand breaks repair)
HR (homologous recombination)
107020593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-like
Motif
Other DBs
NCBI-GeneID:
107020593
NCBI-ProteinID:
XP_015076511
LinkDB
All DBs
Position
5:44421914..44425411
Genome browser
AA seq
636 aa
AA seq
DB search
MPVNLTANAISAINAGDVNSKPVVQVLDIKLIGTTQERYRLTLSDSESTQQAMLATQLND
RVKTGRVRKTSVVQLIEYICSTVQNRKIIVVLNMETIIPECEIIGNPKVIVESDLGVQKT
ISNNGNLSAQRSALASFANIKNLSAQNSNNSMQNYPPAIQPAYQPPPNYKSHGAIMKNEA
PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNSRGDGKVFSFDLLDSDGGEIRVTCFN
AVVDRFYDKIEAGKVYMISKGSLKPAQKNFNHLKNEWEIFLETTSTVDLCPDEDASIPRQ
QFSFRPICEIESAENNSIIDVIGIVTAVNPSVPILRKNGTETQRRILNLKDLSGRSVELT
LWGDFCNREGQNLQELAEAGVSPVLAVKAAKVSDFTGKSIGTISSTHLFINPDSAEAQTL
REWFDQGGKDIASQSISRDNMPVGSKNEIRKTVFQIKDEGLGRSDKPDWVTVKATITFIK
TDTFCYTACPLMIGDRQCNKKVTRSENSRWQCDRCNQEFEECDYRYLLQAQIQDHTGLTW
VTTFQESGEEILGCPAKELYMMKYEEADDTRFSEIIRNCLFTQFLFRLKIKEEFYGDEQR
VKITVVKAEKVNHSAESRYLIDLISKNSVFFEQRKP
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaacttgacggctaacgcgatctcggcgatcaacgccggtgacgtgaactca
aagccagtggttcaggtattggacatcaagttaatcggcaccacacaggaacggtaccga
ctcacactctccgattctgagtccactcagcaggctatgctagctactcagctcaatgac
cgagtcaaaactggccgtgttcgtaaaacctctgtcgttcagttgattgaatacatctgt
agcactgttcaaaatcgcaaaatcattgttgtccttaacatggaaactattatacctgaa
tgtgaaataattgggaaccccaaagtgattgtagaatctgatttaggagttcagaaaact
atatctaacaatggtaacttgagtgctcaaagatctgccctagcaagctttgctaacata
aaaaatttgagtgcccaaaattcaaataatagcatgcagaactatccacctgcaattcaa
cctgcatatcaacctcctccaaattacaaaagccatggggcaatcatgaagaatgaagca
cccgcccgcattattccaattgcagcattgaatccctatcagggtcggtgggctattaag
gctagagtgactgcaaagggggatttacgccgctataataattctagaggagatggcaag
gtcttctcctttgatcttcttgactctgatgggggtgaaatacgtgtgacttgttttaat
gctgttgttgatcgcttttatgacaaaattgaagctggaaaagtatacatgatatcaaaa
ggtagcttaaaacctgctcagaagaacttcaaccatctgaagaatgaatgggaaatattt
ttggagacaacttcaactgtagatctgtgtccagatgaagatgcctctataccaagacag
cagttctcatttagacctatttgtgaaattgaaagtgcagaaaacaattcaatcatagat
gtgattggaattgtgacagcagtcaatccttctgttcctatcctaagaaagaatggaacg
gaaactcaaagaagaatcttgaatctaaaggatctatctgggcgaagtgttgagctgacc
ttatggggagatttctgtaacagggaaggtcaaaacctgcaagaactggcagaagctggg
gtctcccctgttttagctgttaaagctgcaaaagttagcgacttcactgggaaatcaatt
ggaaccatttcgtccacacacctgttcataaatccagattccgcagaggctcagactcta
agagagtggtttgatcagggggggaaagacattgcttctcaatctatatctagggacaac
atgcctgtaggatcaaaaaatgagatacgcaagactgtctttcagataaaggatgaaggg
cttggtaggtcagataaaccagactgggttacagttaaggcaaccataacatttatcaaa
actgacactttctgttatactgcttgccctttgatgattggagatagacaatgtaataag
aaagtaaccaggtcagagaactccagatggcaatgtgataggtgtaatcaagagtttgag
gaatgtgattacagataccttcttcaagctcaaattcaagatcatactgggttgacatgg
gtgacaactttccaggaatctggtgaagagattttaggctgtcctgcaaaggagctgtac
atgatgaaatatgaagaggctgatgataccagattttctgaaattattagaaactgtctc
ttcacacaatttctgttccggctaaaaatcaaagaggaattttatggtgacgagcagagg
gtgaaaattacagttgtcaaggcagagaaagtgaaccattctgcagaaagcagatatctc
attgatttaatttctaaaaattctgtcttttttgaacaaaggaagccataa
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