Solanum pennellii: 107020727
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Entry
107020727 CDS
T04130
Name
(RefSeq) structural maintenance of chromosomes protein 6B
KO
K22804
structural maintenance of chromosomes protein 6
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107020727
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
107020727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_13
AAA_15
DUF948
AAA_29
AAA_21
SbcC_Walker_B
SMC_hinge
ABC_tran
Filo_VP35
Motif
Other DBs
NCBI-GeneID:
107020727
NCBI-ProteinID:
XP_015076680
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Position
5:73914245..73940987
Genome browser
AA seq
1054 aa
AA seq
DB search
MADRVPTVRPKRLQAGIISKIRLENFMCHSNLEIDFGDWVNFITGQNGSGKSAILTALCV
AFGSRARGTQRANSLKDFIKTGCSHALVHVEMNNRGEDAFKGETYGDLIMIERRISESSS
SIVLKNYQGKKVASKREELQELIVHFNIDVENPCVIMSQDKSREFLHSGNSKDKFKFFFK
ATLLQQVEDLLIGIQSQLKNANELVAELEKSINPIEKELDELQGKIRSMEHIEEISNQVD
LLKKKLAWAWVYSVDKQLQDKSKRIEELKGRIPTCQSRIDQHLRKMEELNDQLTKKKAQI
AHMMEKTSEVRKMTDELKQCLSLATKEKLELEEERGRKSNYIQKMAKRVKMFEQQIRDMD
EQNIRNTQAEELDMEVKLKEFQAEIDSADVVFQRLRNEEDNLIDKINQAKDQINKIVHEI
EENDKRDRDIRSRIRELQLHQSNKVTAFGGGRVMGLLEVIERQHRKFNRAPIGPIGAHVS
LVDGDKWGTAIECAVGKVLNAFIVNDHKDSLLLRACAREANYNHLQIIIYEFSRPRLHIP
DHMLPQTHHPTAISVLRSDNPTVLNVLIDVGSAERQVLVKDYDAGKTVAFDQRISNLKEV
YTSDGYKMFSRGSVQTTLPPMKNMRGGRLSGSYDDKIKTLESEAFEAQNKARQSKGMKRS
INEELQGLHDNLQSAKRRRHDAERVLRSKEFSLRDFKKSYVAESSSTAVSTVDELHVELS
KVRDEMHEGENLLEKLQLRLKEADNKANEVKISFENLCESAKVEIGALEEAERELMMIDK
DLKDAELKKNHYEGVMSMKVLSQLTGAEAEYQELEHNRRESCKKASIICPESEIEALGGC
DGSTPEQLSAHLARLSQRLQQESRRHPESIEDLRMLYNKKERKILRKQQTYKAFREKLGA
CHKALELRWSKFQRNATLLKRQLTWQFNGHLGKKGISGHIKVSYEEKTLSIEVKMPQDAS
SSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDAVVDFA
LAQGSQWIFITPHDISMVKQDERVKKQQMAAPRS
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggcggatagggttccaactgtaagaccgaagcgtttacaagctggtattatttcgaaa
attcgattggaaaatttcatgtgccatagtaatctcgagattgatttcggtgattgggtt
aatttcattactggacagaacggaagtgggaaaagcgctatactgacagcattatgtgtg
gcttttgggagccgtgctagaggcacacaaagggccaattcactaaaggattttataaag
acgggctgcagccatgcccttgttcacgtggaaatgaataaccgaggagaggatgctttc
aagggtgaaacttatggtgacctcataatgatagagcgcaggatttcagagtcttctagt
tctatcgtactaaagaattaccaaggtaaaaaggtggcttccaaaagagaggaactccaa
gagcttatagtacattttaatattgatgtggaaaatccatgtgtaataatgagtcaagac
aaaagcagggagttcttacattcaggaaattcaaaggacaagttcaagttctttttcaag
gcaacactacttcagcaggtggaagatcttctgattggtatccagagtcaattgaaaaat
gcaaatgaactagttgctgaactggagaaatcgataaatcctatagagaaagaacttgat
gaattgcaaggaaagattagaagcatggagcatatagaggagatatctaatcaggtagac
ctgttgaagaagaaattggcatgggcatgggtctacagtgtagataagcagttacaagat
aaaagcaaacggatcgaggagctgaaaggacggattcccacttgtcaatctcgaattgat
cagcatcttaggaagatggaggaattgaatgatcagttaaccaagaaaaaagctcaaatt
gctcatatgatggaaaagacatcagaagtgaggaagatgacagacgagttgaagcagtgt
ctttctttggctacaaaggaaaaacttgagctagaagaggagcggggtcgtaaatctaat
tacattcaaaagatggcaaaacgggtcaagatgtttgaacaacaaattcgtgatatggat
gagcagaatattagaaatacacaggctgaagagcttgacatggaggtgaaactgaaggag
ttccaagctgagattgacagtgccgatgttgtatttcaaaggttgaggaatgaagaagat
aacctaatagataaaattaatcaggcgaaggatcagataaacaaaattgttcatgagatt
gaagagaatgacaagagggatcgtgacattcgctctcgcattcgtgagttgcaacttcat
caaagtaacaaggttacggcctttggaggaggtagagtgatgggcctcttggaggtaatt
gaaagacaacatagaaagttcaacagggcgccgatcggtccaataggtgctcatgtgagc
ttggttgatggtgacaagtggggtactgctattgaatgtgccgttggcaaggtgcttaat
gcttttattgtaaatgatcataaagattcccttttattaagagcatgtgcaagggaagcg
aactacaatcacttacagattatcatttatgagttctctagaccaaggttgcatattccc
gatcacatgcttccccagactcatcatccaacagcaatttctgttctacgttcagacaat
cctaccgtactaaatgtcttgattgatgtgggtagtgctgagaggcaagttctagttaaa
gactatgatgctggaaaaacagttgcttttgatcaaaggatttcaaatttaaaagaggtt
tacacttctgatggttacaaaatgttttctcggggttctgtccaaactactcttccaccc
atgaagaatatgagaggtgggcgtctttctggttcatatgatgataaaattaaaactcta
gaaagcgaagcatttgaggcacagaacaaagctcgacaaagcaagggtatgaagaggagt
atcaatgaggagcttcaaggactccatgataatctgcaaagcgctaagaggaggcgccac
gatgcagagcgagttttgaggtccaaggagtttagcttgcgagattttaaaaagtcatat
gttgcagaatctagctccaccgctgtatcaacagtagatgaacttcatgttgagctatcg
aaagtccgtgatgagatgcatgaaggagaaaatttattggaaaagcttcaactgaggttg
aaagaagcggacaacaaagctaatgaggtcaaaatatccttcgaaaatttgtgcgaatca
gcaaaagtggaaattggtgcattggaggaagcagaacgtgagctaatgatgattgataaa
gatttaaaagatgcagaattgaagaagaatcactatgaaggtgtaatgagtatgaaagtt
ctttcccaactcactggagcggaagcagagtatcaggaacttgagcacaaccgtagggag
agctgcaaaaaagcttcaatcatctgtcctgaaagtgaaattgaggctttaggtggctgt
gatggaagcactccggagcaattaagtgcccatttagctaggctaagtcaaagacttcag
caagagagtcggagacatccagagtccattgaggacctccgcatgttgtacaacaaaaaa
gaacgcaaaattttaagaaagcagcaaacctacaaagcatttcgtgagaaattaggtgca
tgccataaagccctcgagctacgatggagcaaattccagagaaatgctactcttttgaag
cgacagttaacatggcaatttaatggacatttgggtaaaaaaggaatcagtgggcacatc
aaagttagttatgaagagaagactctttcaatagaggtaaaaatgccccaagatgcatca
agcagcagtgttcgtgacacacgaggactttcagggggagaacgctctttttcaactttg
tgctttgcacttgctcttcatgagatgactgaagctccatttagagcaatggatgaattt
gatgtatttatggatgctgttagcagaaaaatcagcctagacgctgtcgtggattttgca
ttggcacaaggatcacagtggatatttattacccctcatgacatcagtatggtgaagcag
gatgaaagagtaaagaagcagcaaatggcggctcctcgttcttga
DBGET
integrated database retrieval system
