KEGG   Solanum pennellii: 107021163
Entry
107021163         CDS       T04130                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
spen  Solanum pennellii
Pathway
spen03018  RNA degradation
spen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107021163
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107021163
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107021163
   03041 Spliceosome [BR:spen03041]
    107021163
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107021163
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107021163
Spliceosome [BR:spen03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107021163
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 107021163
NCBI-ProteinID: XP_015077257
LinkDB
Position
6:complement(56228899..56232090)
AA seq 98 aa
MASGLGLESLVDQTISVITNDGRNIVGVLRGFDQATNLILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEDLDSNLDMSKLRAHPLKPVVH
NT seq 297 nt   +upstreamnt  +downstreamnt
atggcatctggacttgggcttgagtctcttgttgatcaaactatctcagttattacaaat
gatggacggaatattgtgggagttctgagaggattcgaccaggctacaaacttgattctt
gatgaatctcatgagagagtatattcaacaaaggaaggtgtacagcaacttgtgttaggt
ctttatatcataaggggggacaacataagcgtcgttggggaattagatgaagatcttgat
agtaacttggatatgtcaaaactgagagcacatcctctaaagccagtcgttcactga

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