Solanum pennellii: 107021163
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Entry
107021163 CDS
T04130
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107021163
09123 Folding, sorting and degradation
03018 RNA degradation
107021163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107021163
03041 Spliceosome [BR:
spen03041
]
107021163
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107021163
mRNA degradation factors
5'-3' decay
Lsm complex
107021163
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107021163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
107021163
NCBI-ProteinID:
XP_015077257
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All DBs
Position
6:complement(56228899..56232090)
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AA seq
98 aa
AA seq
DB search
MASGLGLESLVDQTISVITNDGRNIVGVLRGFDQATNLILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEDLDSNLDMSKLRAHPLKPVVH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcatctggacttgggcttgagtctcttgttgatcaaactatctcagttattacaaat
gatggacggaatattgtgggagttctgagaggattcgaccaggctacaaacttgattctt
gatgaatctcatgagagagtatattcaacaaaggaaggtgtacagcaacttgtgttaggt
ctttatatcataaggggggacaacataagcgtcgttggggaattagatgaagatcttgat
agtaacttggatatgtcaaaactgagagcacatcctctaaagccagtcgttcactga
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