Solanum pennellii: 107021236
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Entry
107021236 CDS
T04130
Name
(RefSeq) exosome complex component RRP43-like
KO
K12586
exosome complex component RRP43
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107021236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107021236
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107021236
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
107021236
NCBI-ProteinID:
XP_015077338
UniProt:
A0ABM1GXG2
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Position
6:complement(57658936..57665758)
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AA seq
312 aa
AA seq
DB search
MAAANGSSDLYSEMEVDAFRRLFPLRYHEQHLLKSVRPDARKLGSARDTTLALGAVASAE
GSALAKIGSTTMLAAIKMEIMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVIS
KQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIYCLDADGSLFDAALLSAVAAFSHLNIP
VVSLNEDGRIVLVSEDNIQLKLEKQPVNTEKRKLKLNSPPFSLTCLLHKNYILADPTAEE
ESIMETAVTVVLDSSYQLVSLYKPGGPVHAHTSVIQDCVALAKRRVKELQSVLNEAISDM
EVERSRLSLHHT
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccaatggctcaagtgacttgtattcagagatggaggtggacgcatttaga
cgtcttttccctttgcgctatcatgagcagcatcttctcaaatcggtccgacctgatgct
cgaaagcttggaagtgctagagatacaacacttgcacttggtgccgtggcctctgctgag
ggatcagcactggcaaagattggctccactacgatgctggccgccatcaaaatggaaatc
atgacaccaactgttgaatgtccagatgagggatccatagctatcgaatttcacatgcct
cccatttgttctccccttgtacggcctggtaggcctgcagaggcagcatcagtaatttct
aagcagctgtcagacactatcttgagttctggcatgattgacttgaaagagttgtgcttg
gttggaggaaaagctgcatggatggcctacctggacatatactgtttggatgctgacggt
tctctgtttgacgctgcattactatctgcagttgctgccttttcgcatttgaacattcca
gtagtgtctttgaatgaagatgggcgaatagttcttgtctctgaggacaatatccagttg
aaattggagaagcagcctgtcaatacagagaaaagaaaactaaaattgaactctccacca
ttctccttaacgtgcttacttcacaagaactacatcctagcagatcctacagcagaggaa
gaatctataatggaaacggctgtaactgtggtattggattcgtcctaccagcttgtttca
ctttataaaccagggggaccagttcatgcccatacatcagtcatccaggattgtgtcgca
ctggcaaaacgcagagtgaaagagcttcagagcgtcttaaatgaagctatttctgatatg
gaggttgagcgaagtagattatccttgcaccatacttaa
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