Solanum pennellii: 107021249
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Entry
107021249 CDS
T04130
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
spen
Solanum pennellii
Pathway
spen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107021249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107021249
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107021249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Glyco_hydro_57
Motif
Other DBs
NCBI-GeneID:
107021249
NCBI-ProteinID:
XP_015077356
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Position
6:complement(53559005..53566219)
Genome browser
AA seq
943 aa
AA seq
DB search
MDENFEEQGKLPELKLDARQAQGFLSFFKTLPKDVRAVRLFDRRDYYTAHGDDATFIAKT
YYHTTTALRQLGNGVGALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWKLVKSG
TPGNFGSFEDILFANNEMQDSPAIVALAPKFDQNGCTVGLGYVDITKRVLGLAEFLDDSH
FTNLESALVALGCRECLVPTETGKSSESRPLYDAISRCGVMVTERKKTEFKDRDLVQDLG
RLVKGSVEPVRDLVSSFECAAGALGCILSYAELLADESNYGNYTVKQYNLNSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAF
VEDAALRQDLRQHLKRISDIERLTHNLERKRASLLHVVKLYQSGIRIPYIKSVLERYDGQ
FAPLIRERYIDSLEKWSDDNHLNKFIALVETAVDLDQLENGEYMISSAYDPNLSALKDEQ
ETLEQQIHNLHKQTANDLDLPIDKSLKLDKGTQFGHVFRITKKEEPKVRRQLNSHYIVLE
TRKDGVKFTNTKLKKLGDRYQKILDEYKSCQKELVARVVQTVASFSEVFEGLAGSLSELD
VLLSFADLASSCPTAYSRPNISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTYIRQVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLKGVS
TFMQEMLETASILKGASNRSLVIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATH
FHELTALANENGNNGHKQISGVANFHVSAHIDSSSRKLTMLYKVQPGACDQSFGIHVAEF
ANFPQSVVALAREKASELEDFSPRAMMPNDCKEVVSKRKREFDPHDVSRGTARARQFLQD
FTQLPLDKMDLKQALQQLSQMKTDLEKNAVDSQWLQQFFSSSN
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaattttgaggaacagggcaagcttccagagcttaaacttgatgcgaggcaa
gctcaagggtttctttcattcttcaaaaccctacccaaggatgttagggcagttcgtcta
ttcgatcgtagggactattatactgctcatggagatgatgcaactttcattgcaaagaca
tattaccatacgacaactgctttacggcagttgggtaatggagttggtgctctttccagt
gttagtgtgagtagaaacatgtttgaaacaatagctcgtgacattctcttggagaggatg
gatcgtactcttgaattgtatgagggcagtggttcaaattggaaactggtgaaaagtgga
accccaggaaattttggaagttttgaggacatcctgtttgctaataatgaaatgcaagat
tctccagcgattgttgctcttgcgccaaaatttgatcagaatggatgtacagttgggtta
ggctatgttgatattactaagagagtccttggtttagcagaatttctagatgatagccac
ttcaccaatttggagtctgctttggttgcccttggttgcagagaatgtcttgtaccaaca
gagactgggaaatctagtgagagcaggcctctatatgatgcaatatcgagatgcggggtg
atggtaactgaaagaaagaaaactgaatttaaagatagggatttggtacaggatctgggt
aggcttgtcaagggttcagtagaacctgttcgagatctagtctctagttttgaatgtgca
gcaggtgctttggggtgcatactttcctatgcagaattacttgcggatgagagcaattat
ggaaactacacagtcaaacaatacaacctcaatagttacatgagattagattctgctgct
atgagagcactgaatgttatggagagcaaatcagatgctaataaaaattttagcttgttt
ggtctcatgaatagaacctgtactgctggaatgggtaaaaggttattgcacatgtggctg
aaacagccgttactagatgtagatgagattaactgtagattggatttagttcaagcattt
gtggaggatgctgcacttcgccaagatttgaggcagcatctgaaaagaatttcagatatt
gagcggctgacacacaatcttgagaggaaaagagccagcttattgcacgttgtaaaactc
tatcagtcaggcatcagaataccatatatcaaaagtgttttggaacgttatgatgggcaa
tttgcaccactaatcagggaaaggtatattgattctcttgagaaatggagtgatgataat
catctgaataagttcattgctcttgtggaaactgctgttgaccttgatcaacttgagaat
ggagaatacatgatttcttctgcatatgacccaaatttatctgctctgaaggatgagcag
gagacattggagcaacagattcataatttgcacaaacaaactgccaatgatcttgatcta
cctattgataagtctcttaaattagataaaggaacacaatttggacatgtctttagaatt
accaagaaagaagaaccaaaagtcaggaggcagctaaactctcactacattgttcttgaa
acacgcaaggatggggtaaaattcaccaatacaaaactcaaaaaactaggagatcggtac
cagaagatcttagacgagtataagagctgtcagaaagaactggtagctcgggtagttcaa
acagttgcgagtttctccgaggtgtttgaaggtttagctggttcactttctgagttggat
gtgctactgagttttgcggatttggcttccagttgcccaactgcctactcaagaccaaat
atcagtccgccagatacgggagatattatacttgaagggtgtagacatccttgtgtggaa
gctcaagactgggtcaacttcatccctaatgactgtagactagttaggggagaaagttgg
tttcagattatcacaggccctaacatgggtggaaagtctacctacattcgtcaggttggt
gtgaatgtcctgatggcccaagttggctcatttgttccatgtgacaatgctaccatttct
attcgtgattgcatttttgctcgtgttggcgctggagattgtcagctgaagggggtttct
acttttatgcaagagatgcttgagactgcatcgatcttgaaaggagcttctaatagatcg
ttggttataattgatgagttgggccgtgggacgtcgacttatgatggctttggtttagct
tgggctatttgtgagcacattgttgaagaaattaaagcaccaacattgtttgcaactcac
tttcatgagctgactgcattggccaatgagaatggaaacaatggacataagcaaatttcc
ggtgtggcaaattttcatgtcagtgcacacatcgactcttctagtcgcaagctaactatg
ctttacaaggttcaaccaggtgcttgtgatcaaagttttggtattcacgttgcagagttt
gccaattttccacaaagtgtagtggccctggccagagaaaaggcttctgagttggaggat
ttctctcctcgtgctatgatgccaaatgactgtaaagaggtagtctcaaagcggaagagg
gaatttgacccacatgatgtgtctagaggtactgcccgagctcgtcaattcttacaggat
ttcactcagttgccactggataagatggatctaaagcaggccttgcaacaattgagccaa
atgaagactgaccttgagaagaatgcagttgacagtcagtggcttcagcagttctttagt
tcttcaaattag
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