KEGG   Solanum pennellii: 107021249
Entry
107021249         CDS       T04130                                 
Name
(RefSeq) DNA mismatch repair protein MSH2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
spen  Solanum pennellii
Pathway
spen03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    107021249
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spen03400]
    107021249
DNA repair and recombination proteins [BR:spen03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     107021249
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_II MutS_I Glyco_hydro_57
Other DBs
NCBI-GeneID: 107021249
NCBI-ProteinID: XP_015077356
LinkDB
Position
6:complement(53559005..53566219)
AA seq 943 aa
MDENFEEQGKLPELKLDARQAQGFLSFFKTLPKDVRAVRLFDRRDYYTAHGDDATFIAKT
YYHTTTALRQLGNGVGALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWKLVKSG
TPGNFGSFEDILFANNEMQDSPAIVALAPKFDQNGCTVGLGYVDITKRVLGLAEFLDDSH
FTNLESALVALGCRECLVPTETGKSSESRPLYDAISRCGVMVTERKKTEFKDRDLVQDLG
RLVKGSVEPVRDLVSSFECAAGALGCILSYAELLADESNYGNYTVKQYNLNSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAF
VEDAALRQDLRQHLKRISDIERLTHNLERKRASLLHVVKLYQSGIRIPYIKSVLERYDGQ
FAPLIRERYIDSLEKWSDDNHLNKFIALVETAVDLDQLENGEYMISSAYDPNLSALKDEQ
ETLEQQIHNLHKQTANDLDLPIDKSLKLDKGTQFGHVFRITKKEEPKVRRQLNSHYIVLE
TRKDGVKFTNTKLKKLGDRYQKILDEYKSCQKELVARVVQTVASFSEVFEGLAGSLSELD
VLLSFADLASSCPTAYSRPNISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTYIRQVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLKGVS
TFMQEMLETASILKGASNRSLVIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATH
FHELTALANENGNNGHKQISGVANFHVSAHIDSSSRKLTMLYKVQPGACDQSFGIHVAEF
ANFPQSVVALAREKASELEDFSPRAMMPNDCKEVVSKRKREFDPHDVSRGTARARQFLQD
FTQLPLDKMDLKQALQQLSQMKTDLEKNAVDSQWLQQFFSSSN
NT seq 2832 nt   +upstreamnt  +downstreamnt
atggatgaaaattttgaggaacagggcaagcttccagagcttaaacttgatgcgaggcaa
gctcaagggtttctttcattcttcaaaaccctacccaaggatgttagggcagttcgtcta
ttcgatcgtagggactattatactgctcatggagatgatgcaactttcattgcaaagaca
tattaccatacgacaactgctttacggcagttgggtaatggagttggtgctctttccagt
gttagtgtgagtagaaacatgtttgaaacaatagctcgtgacattctcttggagaggatg
gatcgtactcttgaattgtatgagggcagtggttcaaattggaaactggtgaaaagtgga
accccaggaaattttggaagttttgaggacatcctgtttgctaataatgaaatgcaagat
tctccagcgattgttgctcttgcgccaaaatttgatcagaatggatgtacagttgggtta
ggctatgttgatattactaagagagtccttggtttagcagaatttctagatgatagccac
ttcaccaatttggagtctgctttggttgcccttggttgcagagaatgtcttgtaccaaca
gagactgggaaatctagtgagagcaggcctctatatgatgcaatatcgagatgcggggtg
atggtaactgaaagaaagaaaactgaatttaaagatagggatttggtacaggatctgggt
aggcttgtcaagggttcagtagaacctgttcgagatctagtctctagttttgaatgtgca
gcaggtgctttggggtgcatactttcctatgcagaattacttgcggatgagagcaattat
ggaaactacacagtcaaacaatacaacctcaatagttacatgagattagattctgctgct
atgagagcactgaatgttatggagagcaaatcagatgctaataaaaattttagcttgttt
ggtctcatgaatagaacctgtactgctggaatgggtaaaaggttattgcacatgtggctg
aaacagccgttactagatgtagatgagattaactgtagattggatttagttcaagcattt
gtggaggatgctgcacttcgccaagatttgaggcagcatctgaaaagaatttcagatatt
gagcggctgacacacaatcttgagaggaaaagagccagcttattgcacgttgtaaaactc
tatcagtcaggcatcagaataccatatatcaaaagtgttttggaacgttatgatgggcaa
tttgcaccactaatcagggaaaggtatattgattctcttgagaaatggagtgatgataat
catctgaataagttcattgctcttgtggaaactgctgttgaccttgatcaacttgagaat
ggagaatacatgatttcttctgcatatgacccaaatttatctgctctgaaggatgagcag
gagacattggagcaacagattcataatttgcacaaacaaactgccaatgatcttgatcta
cctattgataagtctcttaaattagataaaggaacacaatttggacatgtctttagaatt
accaagaaagaagaaccaaaagtcaggaggcagctaaactctcactacattgttcttgaa
acacgcaaggatggggtaaaattcaccaatacaaaactcaaaaaactaggagatcggtac
cagaagatcttagacgagtataagagctgtcagaaagaactggtagctcgggtagttcaa
acagttgcgagtttctccgaggtgtttgaaggtttagctggttcactttctgagttggat
gtgctactgagttttgcggatttggcttccagttgcccaactgcctactcaagaccaaat
atcagtccgccagatacgggagatattatacttgaagggtgtagacatccttgtgtggaa
gctcaagactgggtcaacttcatccctaatgactgtagactagttaggggagaaagttgg
tttcagattatcacaggccctaacatgggtggaaagtctacctacattcgtcaggttggt
gtgaatgtcctgatggcccaagttggctcatttgttccatgtgacaatgctaccatttct
attcgtgattgcatttttgctcgtgttggcgctggagattgtcagctgaagggggtttct
acttttatgcaagagatgcttgagactgcatcgatcttgaaaggagcttctaatagatcg
ttggttataattgatgagttgggccgtgggacgtcgacttatgatggctttggtttagct
tgggctatttgtgagcacattgttgaagaaattaaagcaccaacattgtttgcaactcac
tttcatgagctgactgcattggccaatgagaatggaaacaatggacataagcaaatttcc
ggtgtggcaaattttcatgtcagtgcacacatcgactcttctagtcgcaagctaactatg
ctttacaaggttcaaccaggtgcttgtgatcaaagttttggtattcacgttgcagagttt
gccaattttccacaaagtgtagtggccctggccagagaaaaggcttctgagttggaggat
ttctctcctcgtgctatgatgccaaatgactgtaaagaggtagtctcaaagcggaagagg
gaatttgacccacatgatgtgtctagaggtactgcccgagctcgtcaattcttacaggat
ttcactcagttgccactggataagatggatctaaagcaggccttgcaacaattgagccaa
atgaagactgaccttgagaagaatgcagttgacagtcagtggcttcagcagttctttagt
tcttcaaattag

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