Solanum pennellii: 107021716
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Entry
107021716 CDS
T04130
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
spen
Solanum pennellii
Pathway
spen04120
Ubiquitin mediated proteolysis
spen04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107021716
04120 Ubiquitin mediated proteolysis
107021716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spen04121
]
107021716
Enzymes [BR:
spen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107021716
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
U-box type E3
107021716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
107021716
NCBI-ProteinID:
XP_015077906
LinkDB
All DBs
Position
6:57166999..57170898
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AA seq
1011 aa
AA seq
DB search
MMTCKPQRTPAEIEDIILRKILLVSLVDSSVNDTRIVYLEMTAAELLGEGKELKLSRDLI
ERVLIDRLSGNFVSAEPPFQYLVNCYRRAHEEGRKIAPMKDKNVRSEMELVVKQVKKLVV
SYCRIHLGNPDMFPNWDMAPANVSLLLPLLFSEFSTSVDEYGGSNGGGEVSSPPGFLDEL
FKNGNSDDMEPILKQLYEDLRGTVLNVSVLGNFQQPLRALMFLVKYPVGAKCLVNHPWWD
PDCLIMNGRVIEMTSILGAFFHVSALPDRIIFESQPDVGQQCFSESATCRPADLSSSFTT
ITTFTNNLYDGLTEVLLTLLKNSTTRENVLGHLATIINKNSSRAQLQIDPLSCASSGMFV
NLSAVMLKLCEPFLDANLTKRDKIDPRYVFSSNRLELRELTALHASSEEVSEWINQNNPG
KVDVSKDGSVTSSGNDCGGPSSRQYNNPISSSEKVKYPFICECFFMTARVLNLGLLKAFS
DFKHLVQDISRYEDDLSTMKTMLEQAPSSQLQQEITHLEKDLESYSQEELCYEAQLLRDV
GLIQRALSFYRLMVVWLVGLVGGFKMPLPSPCPVEFASMPEHFVEDTMELLIFASRIPEA
FDGVLLDDFMNFIILFMASPEYIRNPYLRAKMVEVLNCWMPRDDSSTAMSTLFEGHQLSL
QYLVKNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPNHQNAWRQFAKEEEKG
VYLNFLNFLINDSIYLLDESLGKILELKELEAEMSNKEEWERKPAQERQERTHLFHSQEN
MIQTDMKMANQDVGLLAFTSEQITVPFLLPEMVDRVATMLNYFLLQLVGPQRKSLSLKDP
EKYEFRPKELLKQIVKIYVHLARGDKENIFPAAIIRDGRSYSDQIFSATVDVLRRIGEDT
SIIQEFIDLTEKAKTAASAALDAEAALVDIPDEFIDPIQYTLMKDPVILPSSKKTMDRPV
IQRHLLSQSRDPFSRSHLTADMLIPNTELKAKIEAFIRSHELRKTMEDFNL
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgatgacttgtaaaccacagaggacaccggcagagatcgaagatataattcttcggaaa
atcttgcttgtatctctagttgattcatcggtaaacgatacacgcattgtgtatctagag
atgacggcggcggagctattgggtgagggtaaagagttaaagttgtctagggatttgatt
gagagggttttaatcgaccgactttccggtaattttgtatcggcggaaccaccgtttcag
tatctggtcaattgttaccgtcgggcacatgaagaggggaggaagattgcgccgatgaag
gataagaacgttaggtctgagatggaattggtagttaagcaagtaaagaaacttgttgtc
tcatactgtaggatacatttagggaatcctgatatgtttcccaattgggatatggcacca
gctaatgtatctctgttgcttcctttgttgttttccgagttttcaacttccgtggatgaa
tatggtgggagcaatggtggtggagaagtttcaagtccacctgggtttttggatgagtta
tttaagaatgggaatagtgatgatatggaaccaatactgaagcaattatatgaagatttg
agagggacagtgctaaatgtttcagttttgggtaattttcagcagcctcttagagcttta
atgtttttggttaagtatccagtaggtgcaaagtgtttggtgaatcatccttggtgggat
ccggattgtttgattatgaatggaagagttattgagatgacaagcattttgggtgctttc
tttcatgtcagtgctttgcctgaccgtataatcttcgagagtcagccggatgttggtcag
cagtgtttctctgaatcggctacatgtcgtcctgctgatctctcctcttctttcacaacg
atcacaacttttacgaataacttgtatgatggcttgacagaagttctgttgactcttctg
aaaaattcaaccactcgtgaaaatgtcctcggacatcttgcaactattataaacaaaaat
tcgtcaagggcacagttgcagattgatccattatcttgtgctagttcaggcatgtttgta
aatctcagtgccgttatgcttaagctctgtgaacctttcttagatgccaatttgacaaaa
cgagataagattgacccccgatatgtgttttctagcaaccgtctggaactgagagagctg
actgctctgcatgcatcatcagaagaagtctctgaatggataaatcaaaataatcctggg
aaagttgatgtctctaaagatggcagtgttacaagctctgggaatgactgtggtggacct
tcaagtcgccaatataacaacccaatatcaagtagtgagaaagttaaataccccttcata
tgtgaatgcttcttcatgactgcacgggtgctcaacctgggactcctaaaagcattttca
gactttaagcatcttgttcaagacatttcaagatacgaagatgatttgtctaccatgaaa
accatgctagaacaagcaccctcttcacagttgcagcaggaaataactcacttggaaaaa
gatcttgagtcatattcacaggaagaattatgctatgaagcccaattactgagggatgta
ggacttatccagcgtgcattatccttctacaggttgatggttgtttggctggtggggctt
gttggtggttttaagatgcctttaccttccccttgccctgtggagtttgcatctatgcct
gagcacttcgttgaagataccatggagctgctaatttttgcttctcggattcctgaagct
tttgatggtgtcttgctggacgacttcatgaatttcattatcttgttcatggcaagtcca
gaatatatcagaaacccttaccttcgggcaaagatggttgaagtcctaaactgttggatg
ccccgcgatgacagctctactgcaatgtctactttgtttgaggggcatcaactctctctg
cagtaccttgtgaaaaatcttttgaagctttatgttgacattgaatttacaggttcccac
acgcagttctatgataaatttaatatccgccacaacattgctgaactacttgaatatctt
tggcaagttccaaatcaccagaatgcatggaggcagtttgccaaggaggaggagaagggt
gtttatttgaatttcttaaacttcttgattaatgatagcatctatcttctcgacgaaagt
cttggtaaaattcttgaactaaaagagctggaagctgaaatgtctaacaaagaggaatgg
gagcgaaaaccagctcaagaaaggcaggagagaacccatctgttccattcacaagagaac
atgattcaaactgatatgaagatggcaaatcaagatgtgggcctgttagcatttacttca
gaacaaatcactgttccttttcttcttcctgagatggtggacagagttgctaccatgttg
aattacttcttactacagctggtcggaccacaaagaaaatctcttagcttgaaagaccct
gaaaagtatgaatttcgtccaaaagagttgctgaaacagattgtgaaaatatatgtgcat
ttggcgagaggagataaggagaacatctttccagctgcaattataagagatggtcgctcg
tacagtgatcagatatttagtgctacagttgatgtccttagaagaattggtgaagatacg
agtattatacaagagttcatcgaccttactgaaaaggccaagactgcagcttcagcagca
ctggatgctgaggctgctcttgtagacattcctgatgaattcattgacccgatccaatat
actttaatgaaggatcctgtcatacttccctcttcgaagaaaacaatggaccgacctgtt
attcagcggcaccttcttagtcagagtagagacccatttagccggtctcatctaactgcg
gacatgttgattcccaacactgagttgaaggcgaaaatcgaagcgttcatccggtcccat
gaactgcggaagactatggaggatttcaatttgtaa
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