Solanum pennellii: 107021810
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Entry
107021810 CDS
T04130
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
spen04141
Protein processing in endoplasmic reticulum
spen04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107021810
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107021810
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107021810
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
spen01009
]
107021810
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107021810
03009 Ribosome biogenesis [BR:
spen03009
]
107021810
03110 Chaperones and folding catalysts [BR:
spen03110
]
107021810
04131 Membrane trafficking [BR:
spen04131
]
107021810
03051 Proteasome [BR:
spen03051
]
107021810
03029 Mitochondrial biogenesis [BR:
spen03029
]
107021810
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spen04147
]
107021810
Protein phosphatases and associated proteins [BR:
spen01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
107021810
Spliceosome [BR:
spen03041
]
Complex B
Other components
Prp19 complex
107021810
Complex C
Prp19-CDC5 complex
107021810
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
107021810
Chaperones and folding catalysts [BR:
spen03110
]
Heat shock proteins
HSP70 / DNAK
107021810
Membrane trafficking [BR:
spen04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
107021810
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
107021810
Proteasome [BR:
spen03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
107021810
Mitochondrial biogenesis [BR:
spen03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
107021810
Exosome [BR:
spen04147
]
Exosomal proteins
Proteins found in most exosomes
107021810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
Hydantoinase_A
FGGY_C
Motif
Other DBs
NCBI-GeneID:
107021810
NCBI-ProteinID:
XP_015078010
LinkDB
All DBs
Position
6:501217..503841
Genome browser
AA seq
541 aa
AA seq
DB search
MAGKEEGPAIGIDLGTSYSCVGVWQDDHVEIIANDQGNRTTPSFVAFTDAERLIGDSAMN
QAGENATNTVFNVKRLIGRRITDPTVQSDMKLWPFKVITGPDDKPMIGVNFKGEEKNFAP
EEISSMVLIKMKEIAEAFLGSTVKNAVVSVPAYFNDSQRQATKDAGVIAGLNVTRIINEP
TAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIQEGIFEVKSTTGDTHLGGEDFD
QKLVGQFVLDFKRKHRKDLTSNPKSLRRLRTACERAKRTLSSAEQATVEIDSLYEGIDFK
SSITRAKFEELNMELFKKCVDPIEICLRDARVDKDSVHEIVLVGGSTRIPKVQELLQNFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVKDLRLLDITSLSVGLETARGLMTVLI
PRNTTIPAKKERIFSNYSDNQTRELIQVYEGERARIKDNNLLGKFELSGLHPAPKGILQI
TARFDIDANGILNVSAEDKTTGQRKKITITNDKGRLSKEEIEKMVQDAEKYKADDKEHKK
K
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggccggaaaagaagaaggtccggcgatcgggatcgatctcggaacatcgtactcctgc
gtcggtgtttggcaggatgatcatgtagagatcatcgcaaatgaccaaggcaatcgtacg
acgccgtctttcgttgctttcactgacgccgagcgtctcattggtgactccgctatgaat
caggccggagaaaacgctacaaacactgttttcaatgtgaagcgccttatcgggaggagg
attactgatcccactgtacagagtgacatgaaattgtggccatttaaagttattactgga
cctgatgacaagccaatgattggcgtaaactttaagggtgaagagaagaactttgctcct
gaagaaatctcatctatggtgcttataaagatgaaggaaattgctgaggctttccttgga
tccactgtaaagaatgctgtggtatccgtacctgcatacttcaatgactcgcaacgtcag
gctactaaggatgctggtgtcattgctggtctaaatgtcacacgtattatcaatgagcct
acggctgctgccattgcttatggcctggataaaaaggctagcagtgtaggtgagaagaat
gtgcttatcttcgatcttggtggtggtacttttgatgtctccctcctcactattcaagag
ggaatttttgaggtcaaatctacaactggagatactcatcttggaggagaagattttgac
cagaaattggtcggtcagtttgtcctggatttcaagagaaagcataggaaggacttaaca
agtaatcctaaatctttaagaagattgaggacagcttgtgagagggcaaagagaactctt
tcttcagccgaacaggcaactgttgaaattgattcactatacgaaggaattgacttcaaa
tccagcatcacgcgtgccaaatttgaggagttgaacatggaactcttcaagaagtgtgtg
gatccgattgagatatgtttgagggatgctagagtggacaaggacagtgtccatgaaatt
gttcttgttggtggatcaactagaattcccaaggtgcaggagctgttgcagaacttcttt
aacgggaaggagctttgcaagagcatcaaccccgacgaagctgttgcttatggagctgct
gtgcaagcagccattcttagtggagagggcaatgagaaggttaaagatttgcgccttttg
gatatcacctctttatctgtaggactcgaaactgccagaggacttatgaccgtcctgatt
ccaaggaacactaccattcccgcaaagaaagagaggatattctcaaattattctgataac
caaactagagagttaattcaggtttacgagggagagagagcaaggataaaagacaacaac
ttgttgggtaaattcgagctctctggtctacatcctgcaccaaagggtattcttcagata
actgcccgctttgacattgatgccaatggcatcttaaatgtttccgccgaggacaagacg
accggacagaggaaaaaaattacaattacgaatgacaaaggtaggctgtcgaaggaagag
attgagaagatggtccaggatgctgagaagtacaaggcagatgataaagaacacaagaaa
aagtag
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