Solanum pennellii: 107022026
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Entry
107022026 CDS
T04130
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107022026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107022026
04121 Ubiquitin system [BR:
spen04121
]
107022026
03036 Chromosome and associated proteins [BR:
spen03036
]
107022026
03400 DNA repair and recombination proteins [BR:
spen03400
]
107022026
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107022026
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
107022026
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107022026
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107022026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
zf-C3HC4
zf-RING_UBOX
PTCB-BRCT
zf-C3HC4_2
zf-C3HC4_4
zf-RING_6
PHD_NSD
Prok-RING_4
zf-C3HC4_3
zf-RING_10
RTT107_BRCT_5
zf-RING_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
107022026
NCBI-ProteinID:
XP_015078220
LinkDB
All DBs
Position
6:complement(2463855..2471158)
Genome browser
AA seq
702 aa
AA seq
DB search
MAAEAQSIARFLNPLAFHIQKLGLELKCPLCLNLLTKPMLLPCDHIFCNFCVPSSTQVQC
ECPLCKHQYVDQEIRAVPHMESMISIFRSLDATCNAKVFQFQSPDSGRPLEQSPVSVNAD
KSRNEQSVKATIRSNDPSKEIQRHNEHGMPWNVVNHLSVLLSSDRKKDSKNDGYNAEEID
LIQFQQQSPGSAHSSDSNKDIVKETSELRVMKTNSAKQLVEDSSDVVPFLKKEDSVEGLM
HHTAMHENVFHERDVKRQKKLSYGLPEMALQSHDHNQQRESCSRIIANSDCNLTCKLSES
SFVAHPQEVSDQHLLEGSACAFCLKSKITEGTGPMLHYAKGREVVGDATSLSKAIPVHMK
CIDWAPQVYYDGEIIKNLEAELARASKLKCSGCGLKGAALGCLVKSCRRSYHMPCAFEMQ
NCRWDTDNFVMLCPSHKSVKFPSEKSKSRKRANIEARPEPAPITSERLNFWAKSSDGPKE
WVLCGSALSSEEKYMLVKFANVCGATVCKSWNPSVTHVIAATDEKGACTRTLKVLMAILG
GKWILTIDWIKACFQENYPVNEEAYELSLDNHGCFGGPKIGRLRASSNAPKLFDGLKFYL
SGEYVPAYRTDLLDLVENAGGSIIHTKEQLISQTVATQTTSSACLVVYSSDPPRGSEFGE
ERNILLQRQANAEELAKPLGCQVIQHTWILESIATCKLVPFC
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaggctcaaagcattgctcggtttcttaacccattggcttttcatattcaa
aaattgggtcttgagctcaaatgccctctttgcttaaacttgctgactaaacctatgttg
cttccctgtgaccatattttttgcaacttttgtgttccgagctcgacccaagttcaatgt
gaatgccctttatgcaaacatcaatatgttgatcaagaaattagggcagtgcctcatatg
gagagtatgatatccatatttagaagcttagatgctacttgcaatgctaaagtctttcaa
ttccaatctcccgattctggaagaccactagagcagtctcccgtttctgttaatgctgac
aaatcaagaaatgagcaatctgtcaaagccacaataagaagcaatgatccgagcaaggag
attcaaaggcacaatgaacatggaatgccatggaatgttgtgaatcatttgagtgtcttg
ctttcttctgacaggaagaaagactcgaaaaatgatgggtataatgcagaggaaatagat
ttgattcaatttcaacagcagtcaccaggcagtgctcattcatcagacagcaacaaagat
attgttaaagagaccagtgaactgagagttatgaaaaccaattctgcaaagcagcttgta
gaagatagctcggatgtggttccatttctgaaaaaagaagatagtgttgaaggtttaatg
caccacacagctatgcatgaaaatgtgtttcatgaaagggatgtgaagagacaaaagaaa
ctaagctatggattgccagagatggccttgcagagtcatgatcataatcaacaaagagag
tcttgttcaagaataattgccaactcagactgcaacttgacatgcaaattgagtgaatct
tcttttgttgctcatccacaagaagtttcagatcaacatcttctggaaggcagtgcttgt
gctttctgcctcaaatctaagataacagagggaactggaccaatgctgcactatgcaaaa
ggcagggaggtggtgggagatgccacttcactttcaaaagccatacctgtgcatatgaaa
tgtattgactgggcgcctcaagtatattatgatggtgagatcataaaaaatttggaggct
gaattggcaagagcttcaaaactcaagtgtagtggttgtggcctaaagggtgctgctctt
ggctgccttgtgaagtcttgtcggaggagttaccatatgccctgtgcatttgaaatgcag
aactgccgttgggatactgacaacttcgtcatgctgtgtccgagtcacaaatcagttaaa
tttcctagtgaaaagtcaaagtctaggaagcgtgccaatattgaagcacgtccagaacct
gctcccataacatccgagcgattgaatttttgggcaaaatcgtcagatggaccaaaagag
tgggttctatgcggatctgctctatcctcagaagagaagtatatgttggtcaagtttgct
aatgtgtgtggcgcaactgtgtgcaagtcttggaacccaagtgtcactcatgtcattgca
gcaacagatgaaaagggtgcatgcaccagaacactgaaagttctcatggcaattttgggt
ggaaaatggatcctaacaattgattggataaaagcctgttttcaagaaaattatcctgtc
aatgaagaggcttatgaattaagcctggacaatcatggctgttttggaggtcccaaaatt
ggtagactgagggcttcatccaatgcacctaagctatttgatggtttgaagttttatctg
agtggagagtatgtcccagcttacagaactgacctattagatctagttgaaaatgctgga
ggttccataatccacactaaggaacagttgatttcccagactgttgctacacaaacaact
agctcagcttgtctagttgtttatagcagtgatcctccacgtggtagtgaattcggggaa
gaaagaaacattttgcttcaacgacaagcaaatgctgaggaactggccaagccacttggt
tgtcaggtcattcagcatacatggattctagagtctattgctacatgtaaattagtgccc
ttctgctga
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