Solanum pennellii: 107023098
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Entry
107023098 CDS
T04130
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107023098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107023098
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107023098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
107023098
NCBI-ProteinID:
XP_015079138
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Position
6:complement(41255683..41262719)
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AA seq
1287 aa
AA seq
DB search
MKRHIHYNAHPIDPHPFEAFRYGSWQAVERLRINMGTITTHVLVDGEVIEENIPVTDLRM
RSRKATLSDCACFLRPGLEVCVLSIPYQGEDSGDEKDVKPVWIDGKIRSIERKPHELTCT
CKFHVSVYVTQGPPPILKKTLSKEIKMLPIDQIAVLQKLEPKPCEDKRYRWSSSEDCNSL
QTFKLFIGKFSSDLTWLMTASVLKEATFDVRSIHNQIVYEIVDDDLVRKETNSNQHSYSV
NFKLEDGVQTTTVFQFNRDIPDINSTSDLSESGPLVLYDLMGPRRSKRRFVQPERYYGCD
DDMAEFDVEMTRLVGGRRKVEYEELPLALSIQADHAYRTGEIEEIASSYKRELFGGNIRP
HEKRSSESSSGWRNALKSDVNKLADKKSVTADRQHQLAIVPLHPPSGTDLTVHEQVPLDV
AVPEHLSAEIGEIVSRYIHFNSSSTSHDRKASKMNFTKPEARRWGQVKISKLKFMGLDRR
GGTLGSHKKYKRNTTKKDSIYDIRSFKKGSVAANVYKELIRRCMANIDATLNKEQPPIID
QWKEFQSTKSSQRESGDHLAMNRDEEVSEIDMLWKEMELALASCYLLDDSEDSHAQYASN
VRIGAEIRGEVCRHDYRLNEEIGIICRLCGFVSTEIKDVPPPFMPSSNHNSSKEQRTEEA
TDHKQDDDGLDTLSIPVSSRAPSSSGGGEGNVWALIPDLGNKLRVHQKRAFEFLWKNIAG
SIVPAEMQPESKERGGCVISHTPGAGKTLLIISFLVSYLKLFPGSRPLVLAPKTTLYTWY
KEVLKWKIPVPVYQIHGGQTFKGEVLREKVKLCPGLPRNQDVMHVLDCLEKMQMWLSQPS
VLLMGYTSFLTLTREDSPYAHRKYMAQVLRQCPGLLILDEGHNPRSTKSRLRKGLMKVNT
RLRILLSGTLFQNNFGEYFNTLTLARPTFVDEVLKELDPKYKKKNKGASRFSLENRARKM
FIDKISTVIDSDIPKKRKEGLNILKKLTGGFIDVHDGGTSDNLPGLQCYTLMMKSTTLQQ
EILVKLQNQRPIYKGFPLELELLITLGAIHPWLIRTTACSSQYFKEEELEALQKFKFDLK
LGSKVKFVMSLIPRCLLRREKVLIFCHNIAPINLFLEIFERFYGWRKGIEVLVLQGDIEL
FQRGRIMDLFEEPGGPSKVMLASITTCAEGISLTAASRVILLDSEWNPSKSKQAIARAFR
PGQDKVVYVYQLLATGTLEEEKYKRTTWKEWVSSMIFSEDLVEDPSHWQAPKIEDELLRE
IVEEDRATLFHAIMKNEKASNMGSLQE
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcatatacattacaatgctcatccaattgatccacacccttttgaggcattc
cggtacggatcttggcaagctgtggagcgcctaaggatcaatatggggaccatcactact
catgttctagttgatggggaggtgattgaggagaatattccggtaacagatcttcgaatg
agatctagaaaagctactttatctgattgtgcctgcttcttacgacctggacttgaggtt
tgtgtgctttcaatcccttaccaaggagaagattcaggggatgagaaagatgtcaagcct
gtgtggattgatggaaaaataagatctatagagaggaagcctcatgagctcacttgtact
tgcaaatttcatgtcagcgtttatgtcactcaaggccctcctcccattttgaagaaaacc
ctaagtaaagagataaagatgttgcccattgatcagattgcagttctccaaaaacttgaa
cctaaaccttgtgaagacaaacgctaccgttggagttcttctgaggactgcaattcgttg
cagacttttaaactattcataggaaaattctcctctgacctgacatggttaatgactgca
tctgtcctgaaagaagctacatttgatgtgagatcgatacataaccagattgtctatgag
attgtggatgatgatctagtcagaaaagaaacaaattctaaccaacattcttactcagtg
aatttcaagttagaagacggagttcaaacaaccactgtttttcaattcaatagggatatc
ccagatataaattctaccagtgaccttagtgaatccgggcctctagttctgtatgatcta
atgggcccacgaaggtcaaagcgtcggtttgtacagccagagcgttattatggatgtgat
gatgatatggcagaatttgatgttgagatgacaaggttagttgggggtaggagaaaagtg
gagtatgaagaactaccacttgcactttctattcaggctgatcatgcttatcgaactggt
gaaattgaagaaattgccagctcttacaagagagagttgtttggaggaaatatcagacct
catgagaaaaggtcctctgaaagttcatctggatggagaaatgcactcaaatcagatgta
aataagcttgcagacaagaaatcagttacagctgaccgtcaacatcaacttgctattgtt
cccctgcaccctccttcaggaactgatttaactgtccatgaacaggttccacttgatgtt
gctgttcctgaacatttgtctgcagagattggtgaaatagtttccagatatattcatttc
aatagttcttcaacatcgcatgataggaaagcttccaaaatgaacttcacaaaaccggaa
gctagacgctggggtcaagtcaaaatttcaaagttaaagttcatgggacttgatcgaaga
ggtgggacattaggttcacataagaaatacaaaagaaatactacaaagaaggatagtatt
tatgatataagatcattcaaaaagggttctgtagcggctaatgtgtacaaggaattgatc
agaaggtgcatggcgaacattgatgccacacttaataaagaacaaccaccaataattgat
cagtggaaagagtttcagtcaacaaaatctagccagagagagtcgggtgatcatctcgca
atgaatagggacgaagaggtttcagaaattgatatgttatggaaggagatggaactagcc
ttggcatcatgttatcttctagatgacagtgaggattcccatgctcaatatgcaagtaat
gtcaggataggagctgaaatacgtggagaagtttgtcgacatgattatcgactgaatgaa
gaaatcggaattatttgccggctatgtggattcgttagcaccgaaataaaggatgttcca
ccaccttttatgccttcgtcaaaccacaattccagcaaggagcaaagaactgaagaagct
acagatcacaagcaggatgatgatggccttgatactttgtccattcctgtttcttccaga
gcaccctcatcatcaggaggaggggaaggaaatgtctgggcattgatacctgatctggga
aacaaattacgggtacaccaaaaaagagcctttgagtttttgtggaaaaatattgctgga
tccatagtacctgcagaaatgcaaccagagagcaaagagagaggtggctgtgttatttct
catactccaggagctgggaaaaccttacttattatttccttccttgtaagctacctgaag
ttatttcctgggtcacgaccgttggtccttgctcccaagacaacactctacacctggtac
aaagaagtactgaagtggaagattcctgtgccagtctaccaaattcatggtggtcaaacc
tttaagggagaggttctaagggaaaaggtgaaattatgtcctggtcttcctcgcaaccaa
gatgtcatgcatgtcttggactgccttgagaaaatgcagatgtggctttcgcaaccaagt
gttctcctcatgggttacacctctttcttaacactgacacgggaagattcaccttatgcg
cataggaaatatatggctcaggtgttgcggcagtgtccagggctactaatacttgatgaa
gggcacaacccaagaagtacaaaatcccggttaagaaagggtctaatgaaggtcaataca
cggcttaggattttactttctggtacattatttcagaataattttggagagtatttcaat
acacttaccttagcaaggccaacttttgttgatgaggtcttgaaggagcttgatcccaag
tacaagaagaaaaacaaaggtgcatcgcgcttttcattggaaaatcgagcaagaaagatg
tttattgataaaatttcaactgtcattgattcagacatccccaagaaaaggaaagaaggc
ctaaacatattgaagaaactaacaggtggattcatagatgtgcatgatggtggaacatct
gataaccttcctggtttacaatgttacaccttgatgatgaaatcaactactcttcaacaa
gagatcttagtgaagcttcaaaatcaaaggcccatctacaaaggatttcctctggagtta
gagctgttgattacccttggtgcaatccatccttggttgatcagaacgacagcgtgttct
agccagtacttcaaggaagaggagctggaggctctccagaaattcaagtttgatctgaag
ctgggttcgaaagtcaaatttgtgatgagcctaattcctcgttgtctcctcaggagagaa
aaggttttgatattttgccacaatattgctccaattaatctttttctggagatatttgag
aggttctatgggtggagaaagggcattgaagtactggtgcttcaaggtgacattgagctt
tttcaaagaggaaggataatggatctatttgaggagccaggtggaccatcaaaggttatg
ttggcatccattacaacttgtgcagaaggcattagcttgaccgcagcatcacgtgtaata
ttactggattcggagtggaatccttccaagagcaagcaagccattgcacgggcttttcgt
cctggtcaggacaaagttgtctatgtctaccagcttctggcaacgggcacactggaagag
gagaaatacaaaagaacaacatggaaagaatgggtatcaagcatgatattcagtgaagac
cttgtggaggacccttctcactggcaagcaccaaaaattgaagatgaattattgagagaa
atcgttgaggaggatcgagctacattattccatgccattatgaaaaatgagaaggcttct
aacatgggaagtctgcaggaatga
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