Solanum pennellii: 107023107
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Entry
107023107 CDS
T04130
Name
(RefSeq) RNA polymerase sigma factor sigA-like isoform X1
KO
K03086
RNA polymerase primary sigma factor
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107023107
Transcription machinery [BR:
spen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
107023107
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
SpoOE-like
Motif
Other DBs
NCBI-GeneID:
107023107
NCBI-ProteinID:
XP_015079150
UniProt:
A0ABM1H1Q8
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Position
6:55568442..55573471
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AA seq
505 aa
AA seq
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MAIAAVIGLYAGNRILSSSFYYSDITEKLACSGDHALICNPTRNVINAKKSSNYSAGYVS
NRKKQSVKAVKEHANIASNHSDVEPMVEMLKKLQNESCSEEDSVEVLLLLQKSMLEKQWN
LSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKTSAAAYSASKRLRSV
VGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQ
LAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLL
RGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDS
GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLEN
NPWHGVDGWALKDEVNNLISSTLRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQ
VGLVALEKLKHAARKKQLDAMLVKH
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggccattgctgcagttatcggactctatgcaggaaatagaatcttaagctcgtctttc
tattattctgatattactgaaaagttagcttgtagtggtgatcatgctttgatctgcaat
cctacgagaaatgtgatcaatgctaagaagtcatccaattatagcgctggttatgtttcc
aatcgaaaaaaacaatccgttaaggctgttaaagagcatgcaaacattgcctctaatcat
tctgatgtggagccaatggttgaaatgttaaaaaaactgcagaatgaaagctgcagcgaa
gaagattcagtggaggttcttcttctgctgcagaaatctatgcttgaaaaacaatggaat
ctttcagctgagaaaacattggaagctttcccaccaaatgaaaagaactgtaaaaagaag
atgcagatcacttgttcaggaacttctgctaggcggaggagaatggatactcgtaaaaga
gttcaaattccaaaaacttcagctgcagcatatagtgcaagcaagcgactgagatctgtt
gtcggtccagagctacaacaaaaccgtttgagaggttacatgaatggtgtcgtaaaccaa
gaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttat
ttagaagaacagaaggccagtctgaaggaaagattgggatgtgaaccttctgacgatcaa
ctcgcggtttccttgaagatgtctcttgctgatttacgatctacattaatggagtgttcc
ttggctagagaaaaacttgcaatgagcaatgttcgtctcgtcatgtcaattgcgcaaaga
tatgatagcatgggtactgaaatggctgacctcattcaggggggccttattggactactt
cgcgggatagagaaatttgatcactcaagaggattcaaaatctcaacttatgtttattgg
tggattcgtcagggcgtttcccgagcattagttgataactcaagaacattgagattgccc
atacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagatagt
ggaataactccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagaaagtc
agaaatgcaactgaggcaagcagcaaggtgttttcacttgatagggaagcatatccctct
ttaaatggccttcctggagcaacacttcatagctacattgctgacaatcgcctggagaac
aacccatggcatggagttgatggatgggcgctcaaggatgaagtaaacaatctcatctct
tcaactctcagggaacgcgagagagatattatccgactgtactatggtctggacaatgag
tgccttacctgggaggatattagtagaaggataggtttatccagagaaagagtgaggcag
gttggattagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgca
atgttggttaaacattga
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