Solanum pennellii: 107023230
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Entry
107023230 CDS
T04130
Name
(RefSeq) probable pectate lyase 8 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107023230
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107023230
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Ly49
NosD
Motif
Other DBs
NCBI-GeneID:
107023230
NCBI-ProteinID:
XP_015079341
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Position
6:59925706..59932439
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AA seq
434 aa
AA seq
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MAAALRLSCLCFLQLLIVIVLFINTSADNSIEQAEQFQSLSNSTMTNRLSGNDELRHEHA
EDDPEAIASMVDMSIRNSTERRKLGYFSCRTGNPIDDCWRCDRNWQRNRRRLADCSIGFG
RNAIGGRDGRFYVVTDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMHITLKQELIMNS
FKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNALVRSSPSHYGWRTMADG
DAISIFGSSHIWVDHNSLSNCADGLVDAIMGSTAITISNNYFTHHNEVILLGHSDTYVRD
KVMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRYLA
PVNPFAKEVTKRVEPWEGSWRQWNWRSVGDLLLNGAYFTASGRAAPGSYARASSLAAKSS
SMVGMITSNAGALS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgctctgagattatcatgtttgtgttttcttcaattgctgattgtgatcgta
ctattcatcaatacttcggccgataacagtattgaacaagcagagcaatttcagagctta
agtaactcgactatgacgaacaggttaagtggaaacgatgaacttaggcatgaacatgct
gaagatgatccagaagccattgcttccatggtggatatgagcattaggaatagcacagag
aggaggaaattgggttacttctcatgtaggacgggaaatcctattgatgattgttggcga
tgcgatcgcaattggcaacgtaatcgcagacgcttagctgactgttcaattggttttgga
cgtaacgctattggtggccgagatggcaggttttatgttgtaactgactcgggtgatgat
gatccagtaaatccccgacctggaacactccgtcatgctgtaattcaagatgagccattg
tggatagtgtttaaacgtgatatgcacatcacacttaagcaagaactgatcatgaatagt
ttcaaaacaatcgatgctcgtggtgtgaacgtgcatatcgcgaatggggcttgtattact
atccaatttgttactaatattatcattcatggtctccacattcatgattgtaaaccaact
ggtaatgccttggttagaagctcaccatcacattatggttggaggactatggctgatggt
gatgccatttccattttcggttcaagccatatttgggttgatcacaactctctttctaat
tgtgctgatggtctcgttgatgctattatgggttcaactgcaattaccatttcaaacaat
tacttcacccatcacaatgaggtgattttattggggcacagtgatacctatgtaagagat
aaggttatgcaggtgactattgccttcaaccatttcggtgagggcctcattcagagaatg
ccaagatgtaggcatggctatttccatgtggtgaacaatgactacacgcactgggagatg
tatgccattggtggcagtgctgctcctacaattaacagccagggtaacagataccttgcc
ccagtgaacccttttgccaaagaggtgacaaaaagagtggaaccatgggaaggatcatgg
agacagtggaactggagatcagtgggagaccttttgttgaatggagcatactttactgca
tcgggacgtgctgctccaggcagctatgcaagagcctcaagcttagctgctaagtcctct
tccatggtcggaatgattacctcgaatgctggtgcactttcttga
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