Solanum pennellii: 107023268
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Entry
107023268 CDS
T04130
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107023268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107023268
03012 Translation factors [BR:
spen03012
]
107023268
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107023268
Translation factors [BR:
spen03012
]
Eukaryotic type
Release factors
107023268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
G-alpha
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
107023268
NCBI-ProteinID:
XP_015079386
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Position
6:53384285..53396203
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AA seq
535 aa
AA seq
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MDIEEDIKALQLDSSAEDTVLVNVEDARPDEAIKHDKADGEDSFMEEERKTDDVGKPDMP
EDELRDEAHPDLKPEHVDPKGVSGKESSPPEDMQVEVEVNKKRHLNVVFIGHVDAGKSTI
GGQILLLSGQVDDRTIQKYEKEAKDKNRESWYMAYIMDTNEEERVKGITVEVGRAHFETE
TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTL
GVTKLIIVVNKMDDPTVNWSKERYDEIESKMVPFLRSSGYNVKKDVQFLPISGLLGSNLK
TRLEKSVCPWWSGHCLFEVLDAVEVPPRDPNGPLRMPIIDKFKDMGTVVMGKIESGSIRE
GDNLLIMPNKAAVKVLAIFCDEDRVRHVGPGENVRVRLSGVEEDDLLSGFVLCSNAKPIP
AVTEFVAQLQILELLDNAIFTAGYKAVLHVHAVVEECEIVELMQQIDLKTKKPMKKKPLF
VKNGAIVLCRVQVNNMICVEKFSNFAQLGRFTLRTEGKTVAVGKITALPTVADSA
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggatattgaagaggacatcaaggcgctgcagcttgattcatctgcagaagatactgtg
ttggtcaacgtggaagatgctagacctgatgaagctataaaacatgataaagctgatgga
gaggatagttttatggaagaagagaggaagactgatgatgttgggaaacctgatatgccg
gaagatgagttgagagatgaagcacatccagacttaaagccagagcatgtcgacccaaag
ggtgtctctggaaaagaaagttctccaccagaagatatgcaggtggaggttgaagtcaat
aaaaagaggcatctgaatgtggtatttattggccacgtggatgctggaaagtctactatt
ggaggacaaatactattacttagtggtcaagttgatgaccgtactatacaaaagtatgag
aaagaagcgaaggataaaaacagagagagctggtatatggcctatattatggatacaaat
gaagaagagagggtgaagggaataacagttgaagtaggaagagcacattttgaaacagag
acgacaagatttacaattcttgatgccccgggtcataagagctatgttcccaatatgatc
agtggagcatctcaagctgacataggtgtgctggttatatctgctagaaagggtgaattc
gaaactggatatgaaagaggtgggcagacacgtgaacatgttcaattggcaaagacccta
ggggttacaaagcttattattgttgtaaataagatggatgatcctactgtcaattggtct
aaagaaaggtatgatgagattgagtcaaaaatggttccattcttgagatcatctgggtac
aatgtcaagaaagatgttcaattccttccaatctctgggcttttgggttcaaatttgaaa
actagattggagaagagtgtatgcccatggtggagtggtcactgcctttttgaagtcctt
gatgcagtcgaagttccacctcgagatcctaatggtccattgagaatgcctattattgac
aaatttaaagacatgggaactgtagttatgggtaaaattgagtctggaagcatacgtgag
ggtgataatctactgattatgccaaacaaggctgctgtaaaagtacttgccatattctgt
gatgaagatcgagtaaggcatgttggtcccggagaaaatgtgcgtgttaggttatctgga
gttgaggaagatgaccttttgtcaggctttgtcttgtgcagtaatgcaaagccaatacct
gcagttactgagtttgttgcgcagttacagattcttgagctgttggacaatgctattttt
actgctggatacaaagctgtattgcatgtccatgcggttgttgaggagtgtgagattgtt
gaactgatgcagcagattgatctaaaaactaagaaacctatgaagaaaaaacctctgttt
gttaagaatggcgctattgttttatgccgtgttcaggtaaataatatgatatgtgtagag
aaattctccaactttgctcaacttggacgattcactcttcgcactgaagggaaaactgtt
gctgtggggaaaattactgcactgcctactgttgctgatagtgcataa
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