Solanum pennellii: 107023328
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Entry
107023328 CDS
T04130
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107023328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107023328
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107023328
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
SabA_adhesion
Motif
Other DBs
NCBI-GeneID:
107023328
NCBI-ProteinID:
XP_015079472
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All DBs
Position
6:complement(18392575..18404499)
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AA seq
826 aa
AA seq
DB search
MAEKEKSSRDYRDKHRSSKDKHYEDDHRHHHHRSKHRSEDGHHRSEREGSRERSHYHDRK
EESLEKKHSHKRKDRAESVDRNNADEKRPRVSDKRRTEDDNGRDKRRDDDGDWRDKDEER
REKRRFEGKAKEEEDVEVDEESGGGGLQMPTSKKEPTDNVQDQAVGSIAKGETMGSYNVT
SRTLPGNYLAHGDSPATKVSLLSTTNENKGVNINGSHQIHGKSSTDGTVSGAGKSGSLSL
DALAKAKRALQMQKEWTQKAKKIPALNKNKGPNFTREGLPQVGPKESLQPSANAGIFPTP
VASSDAGVLLTPGSAPSASSPPSSGLPHLKGLTAQKYEAVKRAQELAAKMGFRQDPEFAP
LINMFPGQMPPEVTLQPKPAKAPVLRLDALGREIDEQGNIVNMLKPSSTLKVNINKKKQE
AFQILKPELEVDPEKNPHYDPGMGIDKNKILRPKKMTFQFVEEGKWSRDAEIIKLKSQFG
EARAKELKAKQAQLTKAKAEPDINPNLIEVSERVIAKEKQKEPIPDVEWWDAPLLRSGTY
GDVVDGNVMNEQLKIEKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAR
EKERQEMIRQGLVEPPKPKVKMSNLMKVLGSEATQDPTKLEMEIRSAAAEREQAHVDRNI
ARKLTPDERREKKERKLFDDSNIAPGTIVSVYKINDLSHPQTRFKVDVNAQENRLTGCAV
ISGGISVVVVEGGKKSIKRYGKLMLRRIDWAAAGKKEDDEGEGEGEDEDKPLNKCVLVWQ
GSVAKSSFHRFFVYDCRTEAAARKVFADAGVPHYWDLAVNFKDDEF
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaaagagaaatcgagcagggattacagagacaaacaccgcagttccaaggat
aagcactatgaagatgaccaccgtcatcatcaccatcgttccaagcatcgatcggaagac
ggacatcaccgatctgagagagagggaagccgagaaagatctcattatcatgataggaag
gaggaatcactggagaaaaaacattcgcataagaggaaagaccgagcagaaagtgttgat
agaaacaatgcggatgagaagagacctagagtttctgacaagaggaggaccgaggacgac
aatggtagggataagcggagagatgatgatggagattggagggataaggatgaggagaga
agagagaaaaggaggtttgagggtaaagcaaaggaggaggaggatgttgaagttgatgaa
gaaagtgggggaggtggattgcaaatgccaacttctaagaaagagccaactgataatgtc
caggatcaggctgttggttccattgctaagggtgagacaatgggatcatacaatgtgaca
tcaaggactttgcctggtaactacttggctcatggtgattctccagctaccaaggtatct
ttgctttctaccacaaatgaaaataagggagttaatattaacggatctcatcagattcat
gggaaatctagtacagatgggacagtttccggtgctggcaagagtgggagcttatccctt
gatgctttagcaaaagcaaagagagctttacaaatgcaaaaggagtggactcaaaaggcc
aagaagatacctgcattaaacaagaacaagggtcccaactttactagagagggacttcca
caggtgggacccaaggagagccttcaaccttcggctaatgcagggatttttcctactcca
gttgcatcttcagatgcaggggtattgctaactcctggttcagcaccaagtgcatccagt
ccaccatccagtggtttgcctcatcttaaggggctcacagctcaaaaatatgaagcagta
aagcgtgcacaggagcttgctgctaagatgggattccgacaggacccagaatttgctccc
ctcataaacatgtttccggggcaaatgccaccagaggttacccttcagccgaagcctgca
aaagcccctgttcttcgattggatgcccttggtagggaaatcgatgagcagggaaatatt
gtcaatatgcttaagccatctagcacccttaaggtgaacatcaataaaaagaaacaagaa
gcatttcaaattctcaaacctgaacttgaggttgatcctgagaaaaatccgcattatgat
ccaggcatgggaattgacaagaacaaaattttgaggcccaagaaaatgacttttcagttt
gtggaggaaggcaaatggtccagagatgcagagataatcaagttaaagagccaatttggt
gaagcacgagctaaagagctaaaggcaaagcaagcacagttgaccaaggctaaagcagag
cctgacataaatccgaatctcattgaggtatctgaaagggttatagccaaggaaaaacag
aaggaacctattcctgacgttgagtggtgggatgctcctctgttacgatctggtacttat
ggtgatgttgttgatggtaacgtaatgaacgaacagttgaagattgaaaagatcaccata
tatgttgaacatcctcgccctattgagccacctgctgaaccagctccacctcctccccaa
ccattgaaactaaccaaaaaggagcaaaagaaacttcgaactcagcgaagattggccaga
gagaaagaaagacaagaaatgatacgacaaggcctggtggaaccaccaaagccgaaagtt
aaaatgagcaatctaatgaaagttcttggctcagaagccacacaggatcctacaaagctt
gaaatggagatcagaagtgcggctgctgagcgtgagcaggctcatgtagacaggaatatt
gctcgtaagcttactcctgatgagcgtcgagagaagaaagagaggaaactttttgatgac
tcaaatatcgcaccggggactattgtttcagtatacaaaattaatgacctctctcaccca
caaacgcgcttcaaggtggatgttaacgctcaggagaatcgtttgactgggtgtgcagtg
atctcaggaggtattagtgttgttgttgttgaaggtgggaaaaaatcaatcaagcgatat
gggaaacttatgcttagaagaattgattgggcagctgctggtaagaaagaagatgatgaa
ggtgaaggtgaaggtgaagatgaagataagcctctcaacaagtgtgtgttggtctggcaa
gggagtgttgctaaatcaagcttccataggttttttgtttatgactgcaggacagaggct
gctgctcgtaaagtttttgctgatgctggggttccccattattgggatcttgctgttaac
tttaaagatgacgaattttaa
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