Solanum pennellii: 107023382
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Entry
107023382 CDS
T04130
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
spen03015
mRNA surveillance pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107023382
09122 Translation
03013 Nucleocytoplasmic transport
107023382
03015 mRNA surveillance pathway
107023382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107023382
03041 Spliceosome [BR:
spen03041
]
107023382
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107023382
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107023382
Spliceosome [BR:
spen03041
]
Complex C
Other components
EJC/TREX
107023382
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107023382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
107023382
NCBI-ProteinID:
XP_015079551
UniProt:
A0ABM1H2R5
LinkDB
All DBs
Position
6:52030358..52037499
Genome browser
AA seq
428 aa
AA seq
DB search
MGDTKENEAYEEELLDYEEDDEKAPDSVNGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVPGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLA
LARDKDLPLKNVRHFILDECDKMLDSLDMRRDVQAIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLAECNFPSICIHSGMTQEERLTRYKAFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagatacaaaggagaacgaagcttacgaggaagaacttctcgactacgaagaagat
gatgagaaggccccagattccgttaatggaaaagttaacggcgagtctgccaagaagggt
tatgttggaattcacagttctggattcagagactttcttttaaagccagagctactgcgg
gctattgtggattcagggtttgagcatccctctgaagtgcaacatgagtgtattccacaa
gctattctgggtatggatgttatttgtcaagccaaatctggaatgggcaaaactgctgtt
tttgttctttcgactctgcagcagattgaacctgttcctggtcaggttgcggctttggtc
ctatgtcatacaagggaattagcttatcagatctgtcatgaatttgagaggttcagcaca
tatttacctgatatcaaggttgctgtcttctatggtggtgtcaatatcaaacttcacaag
gagcttctgaagaatgaatgtcctcatattgttgttggaactcctggaagagtacttgca
ttggctagagataaagaccttcctctgaagaatgtgaggcattttattctggatgaatgt
gacaagatgcttgattcacttgacatgaggagagatgtgcaggcaatcttcaagatgact
ccccatgacaagcaagtaatgatgttttcagcaacgctcagcaaggagatccgtccagtc
tgcaaaaaatttatgcaagatccaatggaaatttatgttgacgatgaggcaaagttgacc
cttcatggacttgtacagcattacatcaaattgagtgaaacggagaaaaaccggaagcta
aatgatctgctggatgccttggacttcaatcaagtagtaatatttgtcaagagtgtgaac
agggcagcagagctgaataaattactagcggagtgtaattttccatctatctgcatccac
tctggcatgactcaggaagaaagattgacgcgctacaaagctttcaaggagggtcataag
agaattcttgtggcaactgatttggttggtaggggcattgacattgaaagggttaacatt
gttattaactatgacatgccagattctgcagacacttaccttcacagagtgggtagagct
ggtaggtttgggacgaaaggccttgccattacatttgtgtcctctgcatcagattctgaa
gttcttaatcaggttcaggaaaggtttgaagtagacataaaagagcttcctgagcagatt
gatacttctacatacatgccatcttag
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