Solanum pennellii: 107023515
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Entry
107023515 CDS
T04130
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
spen
Solanum pennellii
Pathway
spen04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107023515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spen04121
]
107023515
Enzymes [BR:
spen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
107023515
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107023515
Multi subunit type E3
ERAD complex
107023515
LMBR1L-GP78-UBAC2 complex
107023515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_2
zf-RING_11
zf-C3HC4_3
zf-RING_5
CUE
zf-RING_16
zf-C3HC4_4
FAR1_N
zf_RING_Vps8_fungal
E3_UbLigase_EDD
U-box_ZFPL1
PHD
zf-RING_Vps41
RINGv
ECM19
Kazal_1
zf_RING_Vps8
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
107023515
NCBI-ProteinID:
XP_015079714
UniProt:
A0ABM1H363
LinkDB
All DBs
Position
6:28743743..28768875
Genome browser
AA seq
594 aa
AA seq
DB search
MLLALRKINIFAMGVTYLSVSAFCTVLSYVGLQCWMGISVEKLKSDGLIRESIINFGNGS
RALENLLGSHTTIALGANFAVNVFILLVLFLKTIFFGDLHSSEIRKLAERLINYIISKGT
FLPLVVPPTLYQAGLWSTWLAVLCFLKMFQALARDRLERLNASPSATSWSYFRVYSALLL
VLSANLLWMRACLIVYKTISSSLFLLLFFEPLSIAFETLQAILVHGFQLLDIYIHDSAND
ISNSRISKLFDISAAGSFGEWKGVLIRNMGFLLDMMTLLMALAHYVHIWWLHGMAFHLVD
AMLFLNIRALLSAIVKRVKGFIKLRIALGTLHGALPDATLEELQTYDDECAICREPMAKA
KKLSCNHLFHLACLRSWLDQGLTENYSCPTCRKPLFIGRSENEVNPQIADVRGDELLARE
MSMGLDQLNLPGHALQNEASRNQMHNPLESRDWRGSGVDSGWLGLDGAGPSTGIRSAASL
GRVQTVMRHLAAVGETYAQTALEDAAWNLWSMRASQAGTSSSAIPPAGSARHIGGAGGLH
LRTTSRATNNNIPNIHTMVETVREVLPHIPGEIIFEDLQRTHSVTVTVNNLLHM
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgctgttagcgctgagaaagataaatatatttgccatgggtgtaacctacttgtcagtt
tcagcattctgcactgttctgagctatgtcgggctccagtgttggatgggaatttcggtt
gagaaactaaaatcagatgggctcatcagggagagtattattaacttcgggaatggaagc
cgtgcattagagaaccttttaggttcacatacaacaattgctctaggagccaattttgca
gtcaacgtatttatactgctagttttgtttcttaagactatattctttggagatttgcac
tcgtcagaaatccgaaagctggctgaacgccttatcaattatattatttccaagggaact
tttcttccgttggttgttccacctacgctgtatcaagcaggcctgtggtcaacgtggcta
gctgttctttgctttttaaagatgtttcaagctttagctagggatcgacttgaacgattg
aatgcctctccttcagctacttcctggtcatatttccgggtgtattctgctttattgctg
gttctctctgccaacttactctggatgagggcgtgcctgattgtatataaaacaataagt
tcatccctttttttgttattgttctttgagcctcttagcatagcatttgagacgctacag
gctattcttgttcatggattccagctgcttgacatatatatccatgactcagcaaatgat
atttcaaatagtagaatatccaagctctttgacatatctgccgcaggctcatttggggaa
tggaaaggcgttcttattcggaatatgggttttctcctggacatgatgactctgttgatg
gcccttgctcattatgtgcacatttggtggcttcatggcatggcatttcaccttgtggat
gcaatgcttttcctaaatatccgtgctttattaagtgccattgtaaaacgggtcaaaggg
tttattaaactgagaatagcattgggaactcttcatggtgcacttcctgatgcaactttg
gaagagctacaaacttatgatgatgaatgtgctatttgcagggaaccaatggcaaaggcg
aaaaaactatcttgtaatcatcttttccatcttgcatgcttgagatcttggttggatcaa
ggtttaactgaaaattattcatgtcccacttgccggaagccgttgtttataggaagaagc
gagaatgaggtaaatcctcaaattgcagatgttcggggtgatgagctgcttgctcgtgag
atgagtatgggacttgatcagttgaatcttcctggccatgcacttcaaaatgaagcttcc
cgcaatcaaatgcacaatcctcttgaaagtcgtgattggaggggttcgggagttgattca
ggttggttgggtttagatggtgctggtccatctacaggcatcaggtcagcggcgagtttg
ggtcgggttcagacagtgatgaggcatcttgcagctgttggagaaacgtatgcacaaact
gctctggaagatgctgcctggaatctttggtctatgcgtgcctcccaggctggtacttcc
agttcagcaattcctcctgcaggttctgcgaggcacattggaggcgctggagggttgcac
ttgaggacaacctcacgtgccacaaacaacaacattccaaacatacacacaatggttgaa
actgttagagaagtgttgccacacatacctggtgaaataatttttgaggatttacagaga
acacactcggtaactgttactgtgaataatcttctgcacatgtga
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