Solanum pennellii: 107023774
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Entry
107023774 CDS
T04130
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
spen
Solanum pennellii
Pathway
spen03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107023774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107023774
03036 Chromosome and associated proteins [BR:
spen03036
]
107023774
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107023774
Coactivators
SAGA/TFTC/STAGA complex
107023774
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107023774
STAGA complex
107023774
TFTC complex
107023774
SAGA complex
107023774
SLIK complex
107023774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
WD40_like
LisH_PAC1
PALB2_WD40
LisH
RAB3GAP2_N
Beta-prop_VPS8
Cytochrom_D1
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
107023774
NCBI-ProteinID:
XP_015080057
LinkDB
All DBs
Position
6:51712969..51730071
Genome browser
AA seq
677 aa
AA seq
DB search
MDEEEIEKAVVAYLKKKGFKQTEIAFQEEQQVNKNSSSSIHNNNNSANSQIDPDLTKKIL
SFSEFETSPQRYQEEYSKLRSWAYSSLDLYKHELLRVLYPVFIHCFMELVARGYIQEARA
FFNSYREDHEMTHLRDLQKLEGVLSPSHLEEMEFAHSIRVSKVNIKMCQYSYDLLLQYLH
KTESITMLGIINERINFQVSPGQPGSISDDAEVVTLVASGHDASLINQKEVLWGMLEDSL
EERLEKTGVSVPDSEKFDGDPKEGEVEENKKKSIEGGKQGAPLKKLKKDKVGIATGKSSR
TESSTVTTAPRVKPELALPAIPVEVELSILEDLRNRVQLSNASLPSVSFYTFVNTHNGLN
CASISHDGSLVAGGFSDSSVKVWDMAKLGEQNGPSFLQGETDSPSSEHVLGANGGRRCYT
LLQGHSGPVYSASFSPHGDFLLSSSSDSTVRLWSTKLNANVVCYKGHNYPVWDVQFSPAG
HYFASSSHDRTARIWSVDRIQPLRIMAGHLSDVDCVRWHANCNYIATGSSDKTVRLWDVQ
SGDCVRIFIGHRSMILSLAMSPDGRYMASGDEDGTVMMWDLSSGRCITPLTGHSSCVWSL
AFSGEGSLLASGSADCTVKLWDVTTSTRAPLKEENKSGGNNRLRLLKTLPTKATPVYALH
FSRRNLLFAAGAFSKSA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaagagattgagaaagcagtcgtagcgtatttgaagaagaagggtttcaag
caaacggagattgcttttcaagaagaacagcaagtgaataaaaacagttcttcttcaatc
cataacaacaacaactcagcaaattctcagattgaccccgacttaaccaaaaaaatcctt
tctttctctgaatttgaaaccagtccccaacgataccaagaagaatatagcaaacttcgt
tcatgggcctatagttcactggatctgtataagcatgagttgcttcgtgttttatatcct
gtatttattcattgtttcatggaacttgtcgctagaggttatattcaagaagcacgagcc
tttttcaatagttaccgtgaagaccatgagatgacgcatctgcgtgatcttcagaagtta
gaaggcgtcctctcaccttcccatctagaggaaatggaatttgctcattctatacgggtg
agcaaagtgaacattaagatgtgtcagtactcctatgaccttttgttgcaatacttgcac
aagacagaatctattacaatgcttgggatcatcaatgagcgcattaattttcaagtttct
cctggacagcctggctctatatctgatgatgcagaagttgtaactcttgttgcaagtggc
catgatgctagtctcataaatcagaaagaagttctttgggggatgcttgaagattcttta
gaagaacggttagaaaagactggagtttctgttccagattcggaaaagtttgacggagat
ccgaaggaaggagaagtggaagaaaacaagaagaagtcaattgaaggtggtaaacaaggt
gcacctcttaaaaaactaaagaaggacaaagttgggattgcaacagggaaatcttctcgt
acagagagcagcacagtgacaactgcaccacgtgtcaaaccggaacttgctttacctgct
atacctgtagaggtagaactttctattctggaagacttgaggaaccgcgtacagttgagt
aatgcatcattgccctctgttagcttctatacatttgttaatacacacaatggactaaac
tgtgcatcaatatcacatgatggatcactagtggctggtggattctcagattcatctgtg
aaggtctgggacatggcaaagcttggggaacaaaatggtccatcttttttgcagggggag
actgattcaccttcaagtgagcatgtgcttggcgcaaatggtggaagaagatgttataca
ttacttcagggccattcagggcctgtttattctgcatcattcagtccgcacggggatttt
cttctttcttcatcatcagattcaacagttcgcttatggagcacaaagttaaatgctaat
gttgtttgctacaaaggccacaattacccagtatgggatgttcagtttagcccagctgga
cattattttgccagttcttcacatgaccgcactgcaaggatctggtctgtggacaggata
cagcctctgagaataatggccggacacttatcagatgtagattgtgtgcgatggcatgca
aattgtaattacattgcaaccggatcaagcgacaaaactgtacgcttgtgggacgtccag
agtggcgactgtgtcagaattttcattggtcataggagtatgatcttatcattggcaatg
tctcctgatggtcgatatatggcatccggtgatgaagatggaacagtcatgatgtgggat
ctctcaagtggacgttgtattactcctttgaccggtcattcctcttgtgtgtggtcactt
gcttttagtggtgaaggttcacttcttgcatcgggctctgctgattgcactgtaaaatta
tgggatgtaaccacaagcaccagagcgccactaaaagaagagaacaaatctggaggtaac
aatagacttcggttattgaagaccctacctaccaaagctacaccagtctatgctttgcac
ttttcacgaagaaatcttctatttgctgctggagctttctcgaaaagtgcatga
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