Solanum pennellii: 107023774
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Entry
107023774 CDS
T04130
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
spen
Solanum pennellii
Pathway
spen03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107023774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107023774
03036 Chromosome and associated proteins [BR:
spen03036
]
107023774
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107023774
Coactivators
SAGA/TFTC/STAGA complex
107023774
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107023774
STAGA complex
107023774
TFTC complex
107023774
SAGA complex
107023774
SLIK complex
107023774
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
CFAP251_N
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
ASA1
Beta-prop_EIPR1
Beta-prop_NOL10_N
Beta-prop_WDR19_1st
PAC11
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Tricorn_2nd
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
LisH_PAC1
PALB2_WD40
Beta-prop_ACSF4
LisH
LisH_SSDP
Cytochrom_D1
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
107023774
NCBI-ProteinID:
XP_015080057
UniProt:
A0ABM1H424
LinkDB
All DBs
Position
6:51712969..51730071
Genome browser
AA seq
677 aa
AA seq
DB search
MDEEEIEKAVVAYLKKKGFKQTEIAFQEEQQVNKNSSSSIHNNNNSANSQIDPDLTKKIL
SFSEFETSPQRYQEEYSKLRSWAYSSLDLYKHELLRVLYPVFIHCFMELVARGYIQEARA
FFNSYREDHEMTHLRDLQKLEGVLSPSHLEEMEFAHSIRVSKVNIKMCQYSYDLLLQYLH
KTESITMLGIINERINFQVSPGQPGSISDDAEVVTLVASGHDASLINQKEVLWGMLEDSL
EERLEKTGVSVPDSEKFDGDPKEGEVEENKKKSIEGGKQGAPLKKLKKDKVGIATGKSSR
TESSTVTTAPRVKPELALPAIPVEVELSILEDLRNRVQLSNASLPSVSFYTFVNTHNGLN
CASISHDGSLVAGGFSDSSVKVWDMAKLGEQNGPSFLQGETDSPSSEHVLGANGGRRCYT
LLQGHSGPVYSASFSPHGDFLLSSSSDSTVRLWSTKLNANVVCYKGHNYPVWDVQFSPAG
HYFASSSHDRTARIWSVDRIQPLRIMAGHLSDVDCVRWHANCNYIATGSSDKTVRLWDVQ
SGDCVRIFIGHRSMILSLAMSPDGRYMASGDEDGTVMMWDLSSGRCITPLTGHSSCVWSL
AFSGEGSLLASGSADCTVKLWDVTTSTRAPLKEENKSGGNNRLRLLKTLPTKATPVYALH
FSRRNLLFAAGAFSKSA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaagagattgagaaagcagtcgtagcgtatttgaagaagaagggtttcaag
caaacggagattgcttttcaagaagaacagcaagtgaataaaaacagttcttcttcaatc
cataacaacaacaactcagcaaattctcagattgaccccgacttaaccaaaaaaatcctt
tctttctctgaatttgaaaccagtccccaacgataccaagaagaatatagcaaacttcgt
tcatgggcctatagttcactggatctgtataagcatgagttgcttcgtgttttatatcct
gtatttattcattgtttcatggaacttgtcgctagaggttatattcaagaagcacgagcc
tttttcaatagttaccgtgaagaccatgagatgacgcatctgcgtgatcttcagaagtta
gaaggcgtcctctcaccttcccatctagaggaaatggaatttgctcattctatacgggtg
agcaaagtgaacattaagatgtgtcagtactcctatgaccttttgttgcaatacttgcac
aagacagaatctattacaatgcttgggatcatcaatgagcgcattaattttcaagtttct
cctggacagcctggctctatatctgatgatgcagaagttgtaactcttgttgcaagtggc
catgatgctagtctcataaatcagaaagaagttctttgggggatgcttgaagattcttta
gaagaacggttagaaaagactggagtttctgttccagattcggaaaagtttgacggagat
ccgaaggaaggagaagtggaagaaaacaagaagaagtcaattgaaggtggtaaacaaggt
gcacctcttaaaaaactaaagaaggacaaagttgggattgcaacagggaaatcttctcgt
acagagagcagcacagtgacaactgcaccacgtgtcaaaccggaacttgctttacctgct
atacctgtagaggtagaactttctattctggaagacttgaggaaccgcgtacagttgagt
aatgcatcattgccctctgttagcttctatacatttgttaatacacacaatggactaaac
tgtgcatcaatatcacatgatggatcactagtggctggtggattctcagattcatctgtg
aaggtctgggacatggcaaagcttggggaacaaaatggtccatcttttttgcagggggag
actgattcaccttcaagtgagcatgtgcttggcgcaaatggtggaagaagatgttataca
ttacttcagggccattcagggcctgtttattctgcatcattcagtccgcacggggatttt
cttctttcttcatcatcagattcaacagttcgcttatggagcacaaagttaaatgctaat
gttgtttgctacaaaggccacaattacccagtatgggatgttcagtttagcccagctgga
cattattttgccagttcttcacatgaccgcactgcaaggatctggtctgtggacaggata
cagcctctgagaataatggccggacacttatcagatgtagattgtgtgcgatggcatgca
aattgtaattacattgcaaccggatcaagcgacaaaactgtacgcttgtgggacgtccag
agtggcgactgtgtcagaattttcattggtcataggagtatgatcttatcattggcaatg
tctcctgatggtcgatatatggcatccggtgatgaagatggaacagtcatgatgtgggat
ctctcaagtggacgttgtattactcctttgaccggtcattcctcttgtgtgtggtcactt
gcttttagtggtgaaggttcacttcttgcatcgggctctgctgattgcactgtaaaatta
tgggatgtaaccacaagcaccagagcgccactaaaagaagagaacaaatctggaggtaac
aatagacttcggttattgaagaccctacctaccaaagctacaccagtctatgctttgcac
ttttcacgaagaaatcttctatttgctgctggagctttctcgaaaagtgcatga
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