Solanum pennellii: 107023796
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Entry
107023796 CDS
T04130
Name
(RefSeq) RNA-binding protein Y14A
KO
K12876
RNA-binding protein 8A
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
spen03015
mRNA surveillance pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107023796
09122 Translation
03013 Nucleocytoplasmic transport
107023796
03015 mRNA surveillance pathway
107023796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107023796
03041 Spliceosome [BR:
spen03041
]
107023796
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107023796
Spliceosome [BR:
spen03041
]
Complex C
Other components
EJC/TREX
107023796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
107023796
NCBI-ProteinID:
XP_015080090
LinkDB
All DBs
Position
6:complement(51401994..51407173)
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AA seq
195 aa
AA seq
DB search
MANPEEAVDFEPEEDDLMDEDVDASSPRAPMPKLKSAITGGGGGSSASKKIKGRGFREET
AEAERNARLSARFDSLDSEGGPGPERSIEGWIILVTGVNEEAQEDDLHNTFGEFGEIKNL
HLNLDRRSGFVKGYALIEYENFEEAERAISEMDGNELLTQTIHVDWAFSKGPFRRRNARR
RSPRSHRSRSPRRRF
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaa
gacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggt
ggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagact
gctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggt
ggccctggacctgaacgatccattgaaggatggattattttagtcactggagttaatgag
gaggcacaagaagatgatcttcataatacatttggtgagttcggggagatcaagaatttg
catttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaa
aactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcag
actatacatgttgattgggcatttagcaaaggtccttttagaaggagaaatgctaggagg
aggtcacctcgtagtcatcgttctagaagtcccaggaggagattctag
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