Solanum pennellii: 107023808
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Entry
107023808 CDS
T04130
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
spen
Solanum pennellii
Pathway
spen03022
Basal transcription factors
spen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107023808
09124 Replication and repair
03420 Nucleotide excision repair
107023808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107023808
03400 DNA repair and recombination proteins [BR:
spen03400
]
107023808
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107023808
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107023808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
107023808
NCBI-ProteinID:
XP_015080104
LinkDB
All DBs
Position
6:complement(54599025..54604471)
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AA seq
290 aa
AA seq
DB search
MTPVSSKLYADDVSLLMVLVDTNPYFWSSMKNTAFTFPKFISHVLAFLNSILLLNQMNQV
VVIATGYNSCDYVFDSSTSSMQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALS
MALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQH
SAFLQQASYISGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHK
NTIDMGFICSVCLSIFCKYHKKCSTCGSNFGEARKQDPSASDQRRTSYGS
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgacaccggtttcatcaaagctttacgcagacgatgtgagcctattgatggttctggtt
gatacaaatccctacttctggagctcaatgaagaacactgccttcacattccctaaattc
atatcacacgttcttgctttcttgaattcgatacttttactgaatcagatgaaccaagta
gttgtgattgcaactgggtacaattcatgtgattatgtattcgattcgtctacctcgtca
atgcaaagagctgagtgtttgttggagaaactggaggattttgtggataaagatgagtcc
ttgagtcaagaagactctgttgatggagttgggttttcgctgctttctggtgcactttct
atggctttgtgctacattcaacgggtatttcgttcagggcctcttcatccacaacctagg
atattgtgtctgcatggatctccagatgggccgggacaatatgttgcagtcatgaattca
attttctcagctcaacgttcgatggtacccattgattcatgtgtaataggatctcagcat
tctgcttttcttcagcaggcttcttacataagtggtggtgtatatttgaaaccccaagta
tcagatggactgtttcaatatctctctacagtttttgcgactgatttacattctcggagc
ttcttgcaacttcccagacctgttggagttgacttccgtgcatcgtgcttttgccataaa
aacacgattgacatgggtttcatatgctctgtttgtttatcaatattctgcaagtatcac
aagaaatgctcaacttgtggatcaaattttggggaggcacgaaagcaggatccctcagcc
tcggatcagaggaggacttcatatggtagttga
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